[gentoo-commits] proj/sci:master commit in: sci-biology/fgap-bin/

[Horea Christian]

commit:     d6d5fc59399df2b7cf9a4d1b5033248fabc2031b
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sun Sep 27 10:42:30 2020 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sun Sep 27 10:42:30 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=d6d5fc59

sci-biology/fgap-bin: removed discontinued package

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/fgap-bin/fgap-bin-1.8.1.ebuild | 34 ------------------------------
 sci-biology/fgap-bin/metadata.xml          | 15 -------------
 2 files changed, 49 deletions(-)

diff --git a/sci-biology/fgap-bin/fgap-bin-1.8.1.ebuild b/sci-biology/fgap-bin/fgap-bin-1.8.1.ebuild
deleted file mode 100644
index 40bd3b93c..000000000
--- a/sci-biology/fgap-bin/fgap-bin-1.8.1.ebuild
+++ /dev/null
@@ -1,34 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-DESCRIPTION="Tool to close gaps in de novo assembled contigs or scaffolds"
-HOMEPAGE="http://www.bioinfo.ufpr.br/fgap"
-SRC_URI="https://sourceforge.net/projects/fgap/files/FGAP_1_8_1_LINUX64b.tar.gz"
-# http://bmcresnotes.biomedcentral.com/articles/10.1186/1756-0500-7-371
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-# Matlab (R2012a) or Octave (3.6.2)
-# fag from sci-biology/fgap-bin needs /usr/local/MATLAB/R2012a/bin/glnx86/libmwi18n.so, which comes from MATLAB
-# export LD_LIBRARY_PATH= /usr/local/MATLAB/R2012a/bin/glnx86
-#
-# Source code (Octave/Matlab): https://sourceforge.net/projects/fgap/files/fgap.m
-
-# MATLAB Component Runtime v7.17: https://sourceforge.net/projects/fgap/files/MCR_LINUX64b.tar.gz
-# http://www.mathworks.com/products/compiler/mcr/index.html
-DEPEND=""
-RDEPEND="${DEPEND}
-	sci-biology/ncbi-tools++"
-S="${WORKDIR}"/FGAP_1_8_1_LINUX64b
-
-src_install(){
-	dobin run_fgap.sh fgap
-	dodoc README
-	insinto /usr/share/"${PN}"/sample_data
-	doins sample_data/*.fasta
-}

diff --git a/sci-biology/fgap-bin/metadata.xml b/sci-biology/fgap-bin/metadata.xml
deleted file mode 100644
index b53e13d28..000000000
--- a/sci-biology/fgap-bin/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@×××××××××××××××.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@g.o</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-	<upstream>
-		<remote-id type="sourceforge">fgap</remote-id>
-	</upstream>
-</pkgmetadata>