Gentoo Archives: gentoo-commits

From: Justin Lecher <jlec@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: eclass/
Date: Thu, 30 Aug 2012 08:38:38
Message-Id: 1346314906.40efcb7e2072e2e49f02d7451a9ab930775f40a5.jlec@gentoo
1 commit: 40efcb7e2072e2e49f02d7451a9ab930775f40a5
2 Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
3 AuthorDate: Thu Aug 30 08:21:46 2012 +0000
4 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
5 CommitDate: Thu Aug 30 08:21:46 2012 +0000
6 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=40efcb7e
7
8 add license
9
10 ---
11 eclass/ligplot+ | 138 +++++++++++++++++++++++++++++++++++++++++++++++++++++++
12 1 files changed, 138 insertions(+), 0 deletions(-)
13
14 diff --git a/eclass/ligplot+ b/eclass/ligplot+
15 new file mode 100644
16 index 0000000..7457f66
17 --- /dev/null
18 +++ b/eclass/ligplot+
19 @@ -0,0 +1,138 @@
20 +LIGPLOT - Automated representation of protein-ligand interactions
21 + ----------------------------------------------------------------
22 +
23 + CONFIDENTIALITY AGREEMENT
24 + -------------------------
25 +
26 +
27 +
28 +In regard to the LIGPLOT , specified in the Appendix herewith
29 +(the Software) supplied to us, the copyright and other
30 +intellectual property rights to which belong to the authors, we
31 +
32 +
33 + __________________________________________________________________
34 +
35 +undertake to the authors that we shall be bound by the following terms
36 +and conditions:-
37 +
38 +1. We will receive the Software and any related documentation in
39 +confidence and will not use the same except for the purpose of the
40 +department's own research. The Software will be used only by such of
41 +our officers or employees to whom it must reasonably be communicated
42 +to enable us to undertake our research and who agree to be bound by
43 +the same confidence. The department shall procure and enforce such
44 +agreement from its staff for the benefit of the authors.
45 +
46 +2. The publication of research using the Software must reference
47 +"Wallace A C, Laskowski R A, Thornton J M (1995). LIGPLOT: A program
48 +to generate schematic diagrams of protein-ligand interactions. Protein
49 +Engineering, 8, 127-134."
50 +
51 +3. Research shall take place solely at the department's premises at
52 +
53 +
54 + __________________________________________________________________
55 +
56 +4. All forms of the Software will be kept in a reasonably secure place
57 + to prevent unauthorised access.
58 +
59 +5. Each copy of the Software or, if not practicable then, any package
60 +associated therewith shall be suitably marked (and such marking
61 +maintained) with the following copyright notice: " Copyright 1994
62 +A C Wallace, R A Laskowski, & J M Thornton All Rights Reserved".
63 +
64 +6. The Software may be modified but any changes made shall be made
65 +available to the authors.
66 +
67 +7. The Software shall be used exclusively for academic teaching and
68 +research. The Software will not be used for any commercial research or
69 +research associated with an industrial company.
70 +
71 +8. The confidentiality obligation in paragraph one shall not apply:
72 +
73 + (i) to information and data known to the department at the time of
74 + receipt hereunder (as evidenced by its written records);
75 +
76 + (ii) to information and data which was at the time of receipt in the
77 + public domain or thereafter becomes so through no wrongful act of
78 + the department;
79 +
80 + (iii) to information and data which the department receives from a third
81 + party not in breach of any obligation of confidentiality owed to
82 + the authors.
83 +
84 +Please sign this Undertaking and return a copy of it to indicate that you
85 +have read, understood and accepted the above terms.
86 +
87 +
88 +
89 + For and on behalf of _____________________________
90 +
91 + _________________________________________________
92 +
93 + ..................................................
94 +
95 + Dated ............................................
96 +
97 +
98 +
99 +e-mail address ___________________________
100 +
101 +
102 +
103 +Please complete the above form, sign it, and then send it, or fax it, to:-
104 +
105 +
106 +Roman Laskowski
107 +European Bioinformatics Institute,
108 +Wellcome Trust Genome Campus,
109 +Hinxton,
110 +Cambridge, CB10 1SD,
111 +United Kingdom
112 +
113 +Fax:- +44 (0)1223 494 468
114 +
115 +roman@××××××.uk
116 +
117 +
118 +If you have any problems either installing the software or running it,
119 +please e-mail your problems to:-
120 +
121 + roman@××××××.uk
122 +
123 +
124 +APPENDIX - Files supplied as part of the LIGPLOT program
125 +--------------------------------------------------------
126 +
127 +Source program files:-
128 +1. ligplot.c
129 +2. ligplot.h
130 +3. hbadd.c
131 +4. hbadd.h
132 +5. dimer.c
133 +6. dimer.h
134 +
135 +Script files:-
136 +1. ligplot.scr
137 +2. ligonly.scr
138 +3. dimplot.scr
139 +4. dimonly.scr
140 +
141 +Parameter file:-
142 +1. ligplot.prm
143 +
144 +Installation instructions:-
145 +1. install.doc
146 +
147 +Documentation:-
148 +1. manual.tar.Z
149 +2. README
150 +
151 +Confidentiality Agreement:-
152 +1. confid.txt
153 +
154 +
155 +
156 + v.4.4.2 - 7 Mar 2003
157 +