[gentoo-commits] gentoo-x86 commit in sci-chemistry/reduce: ChangeLog reduce-3.13.080428-r1.ebuild reduce-2.21.030604.ebuild reduce-3.02.060709.ebuild

[Justin Lecher (jlec)]

jlec        10/02/05 23:41:05

  Modified:             ChangeLog
  Added:                reduce-3.13.080428-r1.ebuild
  Removed:              reduce-2.21.030604.ebuild reduce-3.02.060709.ebuild
  Log:
  Clean old versions, fix for bug 280857 & bug 280858
  (Portage version: 2.2_rc62/cvs/Linux x86_64)

Revision  Changes    Path
1.13                 sci-chemistry/reduce/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/reduce/ChangeLog?rev=1.13&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/reduce/ChangeLog?rev=1.13&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/reduce/ChangeLog?r1=1.12&r2=1.13

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/reduce/ChangeLog,v
retrieving revision 1.12
retrieving revision 1.13
diff -u -r1.12 -r1.13
--- ChangeLog	29 May 2009 00:43:56 -0000	1.12
+++ ChangeLog	5 Feb 2010 23:41:04 -0000	1.13
@@ -1,6 +1,13 @@
 # ChangeLog for sci-chemistry/reduce
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/reduce/ChangeLog,v 1.12 2009/05/29 00:43:56 dberkholz Exp $
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/reduce/ChangeLog,v 1.13 2010/02/05 23:41:04 jlec Exp $
+
+*reduce-3.13.080428-r1 (05 Feb 2010)
+
+  05 Feb 2010; Justin Lecher (jlec) <jlec@g.o>
+  +files/3.13.080428-LDFLAGS.patch, -reduce-2.21.030604.ebuild,
+  -reduce-3.02.060709.ebuild, +reduce-3.13.080428-r1.ebuild:
+  Clean old versions, fix for 280857 & 280858
 
   29 May 2009; Donnie Berkholz <dberkholz@g.o>;
   reduce-3.13.080428.ebuild:



1.1                  sci-chemistry/reduce/reduce-3.13.080428-r1.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/reduce/reduce-3.13.080428-r1.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/reduce/reduce-3.13.080428-r1.ebuild?rev=1.1&content-type=text/plain

Index: reduce-3.13.080428-r1.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/reduce/reduce-3.13.080428-r1.ebuild,v 1.1 2010/02/05 23:41:04 jlec Exp $

EAPI="3"

inherit eutils toolchain-funcs

MY_P="${PN}.${PV}.src"

DESCRIPTION="Adds hydrogens to a Protein Data Bank (PDB) molecule structure file"
HOMEPAGE="http://kinemage.biochem.duke.edu/software/reduce.php"
SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/reduce31/${MY_P}.tgz"

LICENSE="richardson"
SLOT="0"
KEYWORDS="~amd64 ~ppc ~x86"
IUSE=""

RDEPEND=""
DEPEND="${RDEPEND}
	app-arch/unzip"

S="${WORKDIR}/${MY_P}"

src_prepare() {
	epatch "${FILESDIR}"/${PV}-LDFLAGS.patch
}

src_compile() {
	DICT_DIR="/usr/share/reduce"
	DICT_FILE="reduce_het_dict.txt"

	emake \
		CC="$(tc-getCC)" \
		CXX="$(tc-getCXX)" \
		OPT="${CXXFLAGS}" \
		DICT_HOME="${EPREFIX}/${DICT_DIR}/${DICT_FILE}" \
		|| die "make failed"
}

src_install() {
	dobin "${S}"/reduce_src/reduce || die
	insinto ${DICT_DIR}
	doins "${S}"/${DICT_FILE} "${S}"/reduce_wwPDB_het_dict.txt || die
	dodoc README.usingReduce.txt || die
}

pkg_info() {
	elog "To use the PDBv3 dictionary instead of PDBv2, set the environment"
	elog "variable REDUCE_HET_DICT to /usr/share/reduce/reduce_wwPDB_het_dict.txt"
}

pkg_postinst() {
	pkg_info
}