[gentoo-commits] proj/sci:master commit in: sci-biology/blasr/

[Andrew Ammerlaan]

commit:     f7b9dacac004dc76d69a9b619f77963a5f83ca17
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Wed Jan 13 20:17:55 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Wed Jan 13 20:17:55 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=f7b9daca

sci-biology/blasr: add dep on libblasr

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/blasr/blasr-9999.ebuild | 43 +++++++++----------------------------
 1 file changed, 10 insertions(+), 33 deletions(-)

diff --git a/sci-biology/blasr/blasr-9999.ebuild b/sci-biology/blasr/blasr-9999.ebuild
index 3fe868450..6f5d10b16 100644
--- a/sci-biology/blasr/blasr-9999.ebuild
+++ b/sci-biology/blasr/blasr-9999.ebuild
@@ -1,49 +1,26 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=7
 
-inherit git-r3
+inherit meson git-r3
 
 DESCRIPTION="The PacBio long read aligner"
 HOMEPAGE="http://www.smrtcommunity.com/SMRT-Analysis/Algorithms/BLASR"
-#SRC_URI="https://github.com/PacificBiosciences/blasr/tarball/${PV} -> ${P}.tar.gz"
-SRC_URI=""
 EGIT_REPO_URI="https://github.com/PacificBiosciences/blasr.git"
+#SRC_URI="https://github.com/PacificBiosciences/blasr/tarball/${PV} -> ${P}.tar.gz"
 
 LICENSE="blasr"
 SLOT="0"
-IUSE="hdf5"
 KEYWORDS=""
 
-CDEPEND="
-	dev-util/meson
-	dev-util/ninja
+BDEPEND="
 	dev-util/cmake
-	dev-util/pkgconfig"
-# needs libblasr
+	virtual/pkgconfig
+"
 DEPEND="
 	sci-biology/pbbam
+	sci-biology/libblasr
 	dev-libs/boost:=[threads]
-	hdf5? ( >=sci-libs/hdf5-1.8.12[cxx] )" # needs H5Cpp.h
-RDEPEND=""
-
-S="${WORKDIR}/blasr-9999"
-
-#src_configure(){
-#	if use hdf5; then \
-#		python ./configure.py --shared --sub --no-pbbam HDF5_INCLUDE="${EPREFIX}"/usr/include HDF5_LIB="${EPREFIX}"/usr/lib64 || die
-#	else
-#		python ./configure.py --shared --sub --no-pbbam || die
-#	fi
-#}
-
-src_compile(){
-	bash scripts/ci/build.sh || die
-	# BUG: meson.build:54:0: ERROR:  Dependency "pbbam" not found, tried pkgconfig and cmake
-}
-
-src_install() {
-	dodir /usr/bin
-	emake install ASSEMBLY_HOME="${ED}/usr"
-}
+"
+RDEPEND="${DEPEND}"