[gentoo-commits] repo/gentoo:master commit in: sci-libs/h5part/files/, sci-libs/h5part/

[Christoph Junghans]

commit:     8c97cd436ee599550cee4e9bdfabb010a5b4b227
Author:     Christoph Junghans <junghans <AT> gentoo <DOT> org>
AuthorDate: Fri Dec  2 00:32:27 2016 +0000
Commit:     Christoph Junghans <junghans <AT> gentoo <DOT> org>
CommitDate: Fri Dec  2 00:42:24 2016 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8c97cd43

sci-libs/h5part: initial commit

Package-Manager: portage-2.3.0

 sci-libs/h5part/Manifest                      |  1 +
 sci-libs/h5part/files/h5part-1.6.6-mpio.patch | 26 ++++++++++++++++++++++++
 sci-libs/h5part/h5part-1.6.6.ebuild           | 29 +++++++++++++++++++++++++++
 sci-libs/h5part/metadata.xml                  | 12 +++++++++++
 4 files changed, 68 insertions(+)

diff --git a/sci-libs/h5part/Manifest b/sci-libs/h5part/Manifest
new file mode 100644
index 00000000..4a20b79
--- /dev/null
+++ b/sci-libs/h5part/Manifest
@@ -0,0 +1 @@
+DIST H5Part-1.6.6.tar.gz 441755 SHA256 10347e7535d1afbb08d51be5feb0ae008f73caf889df08e3f7dde717a99c7571 SHA512 0842017bfe1510746e6f9451daaaaff3d9f6eee5209e241bcc8f2d0ce96450b8929f718c41a3434f53c9457adc2547628ad57ac8a0fb1cbfb7c74862aebf996d WHIRLPOOL 0b2cf42ecc50ca157a7a9a4faf781786a765d04b188f4d23b5a388815e6f40de743e28458c24656f48a477fcaf297a62b5132a0aa226ea364974306b0ab6064e

diff --git a/sci-libs/h5part/files/h5part-1.6.6-mpio.patch b/sci-libs/h5part/files/h5part-1.6.6-mpio.patch
new file mode 100644
index 00000000..152cfec
--- /dev/null
+++ b/sci-libs/h5part/files/h5part-1.6.6-mpio.patch
@@ -0,0 +1,26 @@
+https://github.com/quinoacomputing/H5Part/commit/b8b106c368c3400b4df3d38e97ae2943d37d3c7d.patch
+
+From b8b106c368c3400b4df3d38e97ae2943d37d3c7d Mon Sep 17 00:00:00 2001
+From: Jozsef Bakosi <jbakosi@××××.gov>
+Date: Thu, 28 Jul 2016 08:37:24 -0600
+Subject: [PATCH] Replace H5Pset_fapl_mpiposix with H5Pset_fapl_mpio
+
+Based on the advice at
+http://www.unidata.ucar.edu/mailing_lists/archives/netcdfgroup/2014/msg00188.html.
+---
+ src/H5Part.c | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/src/H5Part.c b/src/H5Part.c
+index 433a574..8a1b893 100644
+--- a/src/H5Part.c
++++ b/src/H5Part.c
+@@ -246,7 +246,7 @@ _H5Part_open_file (
+ 		/* select the HDF5 VFD */
+ 		if (flags & H5PART_VFD_MPIPOSIX) {
+ 			_H5Part_print_info ( "Selecting MPI-POSIX VFD" );
+-			if (H5Pset_fapl_mpiposix ( f->access_prop, comm, 0 ) < 0) {
++			if (H5Pset_fapl_mpio ( f->access_prop, comm, 0 ) < 0) {
+ 				HANDLE_H5P_SET_FAPL_ERR;
+ 				goto error_cleanup;
+ 			}

diff --git a/sci-libs/h5part/h5part-1.6.6.ebuild b/sci-libs/h5part/h5part-1.6.6.ebuild
new file mode 100644
index 00000000..14d141a
--- /dev/null
+++ b/sci-libs/h5part/h5part-1.6.6.ebuild
@@ -0,0 +1,29 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+MY_P="${P^^[hp]}"
+DESCRIPTION="Portable High Performance Parallel Data Interface to HDF5"
+HOMEPAGE="http://vis.lbl.gov/Research/H5Part/"
+SRC_URI="https://codeforge.lbl.gov/frs/download.php/latestfile/18/${MY_P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="
+	virtual/mpi
+	sci-libs/hdf5[mpi]
+	"
+RDEPEND="${DEPEND}"
+
+PATCHES=( "${FILESDIR}/${P}-mpio.patch" )
+
+S="${WORKDIR}/${MY_P}"
+
+src_configure() {
+	econf --enable-parallel --enable-shared --disable-static
+}

diff --git a/sci-libs/h5part/metadata.xml b/sci-libs/h5part/metadata.xml
new file mode 100644
index 00000000..903883b
--- /dev/null
+++ b/sci-libs/h5part/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<email>junghans@g.o</email>
+		<name>Christoph Junghans</name>
+	</maintainer>
+	<maintainer type="project">
+		<email>sci@g.o</email>
+		<name>Gentoo Science Project</name>
+	</maintainer>
+</pkgmetadata>