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| From: | "Andrey Kislyuk (weaver)" <weaver@g.o> |
|---|---|
| To: | gentoo-commits@l.g.o |
| Subject: | [gentoo-commits] gentoo-x86 commit in sci-biology/bowtie: ChangeLog bowtie-0.10.0.ebuild bowtie-0.9.9.1.ebuild |
| Date: | Sun, 21 Jun 2009 15:15:45 |
| Message-Id: | E1MIOlj-0001gk-2d@stork.gentoo.org |
| 1 | weaver 09/06/21 15:15:43 |
| 2 | |
| 3 | Modified: ChangeLog |
| 4 | Added: bowtie-0.10.0.ebuild |
| 5 | Removed: bowtie-0.9.9.1.ebuild |
| 6 | Log: |
| 7 | Version bump |
| 8 | (Portage version: 2.2_rc30/cvs/Linux x86_64) |
| 9 | |
| 10 | Revision Changes Path |
| 11 | 1.4 sci-biology/bowtie/ChangeLog |
| 12 | |
| 13 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bowtie/ChangeLog?rev=1.4&view=markup |
| 14 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bowtie/ChangeLog?rev=1.4&content-type=text/plain |
| 15 | diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bowtie/ChangeLog?r1=1.3&r2=1.4 |
| 16 | |
| 17 | Index: ChangeLog |
| 18 | =================================================================== |
| 19 | RCS file: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v |
| 20 | retrieving revision 1.3 |
| 21 | retrieving revision 1.4 |
| 22 | diff -u -r1.3 -r1.4 |
| 23 | --- ChangeLog 2 May 2009 23:48:39 -0000 1.3 |
| 24 | +++ ChangeLog 21 Jun 2009 15:15:43 -0000 1.4 |
| 25 | @@ -1,6 +1,12 @@ |
| 26 | # ChangeLog for sci-biology/bowtie |
| 27 | # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 |
| 28 | -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v 1.3 2009/05/02 23:48:39 weaver Exp $ |
| 29 | +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v 1.4 2009/06/21 15:15:43 weaver Exp $ |
| 30 | + |
| 31 | +*bowtie-0.10.0 (21 Jun 2009) |
| 32 | + |
| 33 | + 21 Jun 2009; Andrey Kislyuk <weaver@g.o> -bowtie-0.9.9.1.ebuild, |
| 34 | + +bowtie-0.10.0.ebuild: |
| 35 | + Version bump |
| 36 | |
| 37 | *bowtie-0.9.9.2 (02 May 2009) |
| 38 | |
| 39 | |
| 40 | |
| 41 | |
| 42 | 1.1 sci-biology/bowtie/bowtie-0.10.0.ebuild |
| 43 | |
| 44 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bowtie/bowtie-0.10.0.ebuild?rev=1.1&view=markup |
| 45 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bowtie/bowtie-0.10.0.ebuild?rev=1.1&content-type=text/plain |
| 46 | |
| 47 | Index: bowtie-0.10.0.ebuild |
| 48 | =================================================================== |
| 49 | # Copyright 1999-2009 Gentoo Foundation |
| 50 | # Distributed under the terms of the GNU General Public License v2 |
| 51 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.10.0.ebuild,v 1.1 2009/06/21 15:15:43 weaver Exp $ |
| 52 | |
| 53 | EAPI="2" |
| 54 | |
| 55 | DESCRIPTION="An ultrafast memory-efficient short read aligner" |
| 56 | HOMEPAGE="http://bowtie-bio.sourceforge.net/" |
| 57 | SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip" |
| 58 | |
| 59 | LICENSE="Artistic" |
| 60 | SLOT="0" |
| 61 | IUSE="" |
| 62 | KEYWORDS="~amd64 ~x86" |
| 63 | |
| 64 | DEPEND="app-arch/unzip" |
| 65 | RDEPEND="" |
| 66 | |
| 67 | # NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de) |
| 68 | # TODO: properly report system CFLAGS in -DCOMPILE_OPTIONS |
| 69 | |
| 70 | src_prepare() { |
| 71 | sed -i 's/$(CXX) $(RELEASE_FLAGS)/$(CXX) $(CXXFLAGS) $(RELEASE_FLAGS)/' "${S}/Makefile" || die |
| 72 | } |
| 73 | |
| 74 | src_install() { |
| 75 | dobin bowtie bowtie-* || die |
| 76 | newman MANUAL bowtie.1 |
| 77 | dodoc AUTHORS NEWS TUTORIAL |
| 78 | } |