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commit: 34064629ffa589001b3c102ba9c4d6d366f85c2b |
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Author: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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AuthorDate: Mon Sep 21 19:43:41 2015 +0000 |
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Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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CommitDate: Mon Sep 21 19:43:41 2015 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=34064629 |
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|
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sci-biology/autoeditor: Bump to EAPI 5 |
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|
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Package-Manager: portage-2.2.20.1 |
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Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> |
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|
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sci-biology/autoeditor/autoeditor-1.20.ebuild | 10 +++++----- |
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sci-biology/autoeditor/metadata.xml | 2 +- |
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2 files changed, 6 insertions(+), 6 deletions(-) |
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|
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diff --git a/sci-biology/autoeditor/autoeditor-1.20.ebuild b/sci-biology/autoeditor/autoeditor-1.20.ebuild |
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index 59868e6..1eda9ca 100644 |
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--- a/sci-biology/autoeditor/autoeditor-1.20.ebuild |
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+++ b/sci-biology/autoeditor/autoeditor-1.20.ebuild |
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@@ -1,8 +1,8 @@ |
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-# Copyright 1999-2014 Gentoo Foundation |
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+# Copyright 1999-2015 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Id$ |
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|
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-EAPI=3 |
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+EAPI=5 |
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|
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inherit eutils |
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|
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@@ -15,7 +15,7 @@ SRC_URI=" |
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LICENSE="Artistic" |
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SLOT="0" |
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KEYWORDS="~amd64 ~x86" |
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-IUSE="" |
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+IUSE="test" |
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|
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DEPEND=" |
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>=sci-libs/io_lib-1.8.11 |
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@@ -26,7 +26,7 @@ RDEPEND="${DEPEND}" |
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S="${WORKDIR}"/autoEditor-1.20 |
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|
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src_prepare(){ |
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- epatch "${FILESDIR}"/Makefile.patch || die |
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+ epatch "${FILESDIR}"/Makefile.patch |
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rm -rf TigrFoundation-2.0 || die "Failed to drop TigrFoundation-2.0/" |
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} |
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|
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@@ -36,6 +36,6 @@ src_prepare(){ |
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# * getConsQV.c:1051: warning: implicit declaration of function 'memset' |
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|
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src_test(){ |
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- make sample > sample.out || die |
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+ emake sample > sample.out |
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diff -u -w "${FILESDIR}"/sample_expected.out sample.out || die |
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} |
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|
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diff --git a/sci-biology/autoeditor/metadata.xml b/sci-biology/autoeditor/metadata.xml |
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index 5990f62..b0b877b 100644 |
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--- a/sci-biology/autoeditor/metadata.xml |
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+++ b/sci-biology/autoeditor/metadata.xml |
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@@ -6,7 +6,7 @@ |
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<email>mmokrejs@×××××××××××××××.cz</email> |
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<name>Martin Mokrejs</name> |
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</maintainer> |
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- <longdescription>AutoEditor is a program that can automatically correct discrepancies in a |
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+ <longdescription>AutoEditor is a program that can automatically correct discrepancies in a |
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multiple alignment by reanalyzing the chromatograms of the discrepant bases. |
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The input to AutoEditor is the multiple alignment in contig form, the sequence |
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and quality values in FASTA format, and the base call positions in |
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