Gentoo Archives: gentoo-commits

From: Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/bamtools/, sci-biology/bamtools/files/
Date: Thu, 31 Mar 2016 23:13:25
Message-Id: 1459465846.778b9cad7be047675ab8b1c8b0d54e5f4f2c7f4c.mmokrejs@gentoo
1 commit: 778b9cad7be047675ab8b1c8b0d54e5f4f2c7f4c
2 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
3 AuthorDate: Thu Mar 31 23:10:46 2016 +0000
4 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
5 CommitDate: Thu Mar 31 23:10:46 2016 +0000
6 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=778b9cad
7
8 sci-biology/bamtools: version bump; still suffers gentoo bug #550144
9
10 Package-Manager: portage-2.2.28
11
12 sci-biology/bamtools/bamtools-2.4.0.ebuild | 31 ++++++++++++++++++++++
13 .../bamtools/files/bamtools-2.4.0-unbundle.patch | 23 ++++++++++++++++
14 2 files changed, 54 insertions(+)
15
16 diff --git a/sci-biology/bamtools/bamtools-2.4.0.ebuild b/sci-biology/bamtools/bamtools-2.4.0.ebuild
17 new file mode 100644
18 index 0000000..b2d7d62
19 --- /dev/null
20 +++ b/sci-biology/bamtools/bamtools-2.4.0.ebuild
21 @@ -0,0 +1,31 @@
22 +# Copyright 1999-2015 Gentoo Foundation
23 +# Distributed under the terms of the GNU General Public License v2
24 +# $Id$
25 +
26 +EAPI=5
27 +
28 +inherit cmake-utils
29 +
30 +DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files"
31 +HOMEPAGE="https://github.com/pezmaster31/bamtools"
32 +SRC_URI="https://github.com/pezmaster31/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
33 +
34 +LICENSE="MIT"
35 +SLOT="0"
36 +KEYWORDS="~amd64 ~x86"
37 +IUSE="static-libs"
38 +
39 +DEPEND="
40 + >=dev-libs/jsoncpp-0.5.0-r1
41 + <dev-libs/jsoncpp-1
42 + sys-libs/zlib"
43 +RDEPEND="${DEPEND}"
44 +
45 +PATCHES=( "${FILESDIR}"/${P}-unbundle.patch )
46 +
47 +src_install() {
48 + cmake-utils_src_install
49 + if ! use static-libs; then
50 + rm "${ED}"/usr/$(get_libdir)/*.a || die
51 + fi
52 +}
53
54 diff --git a/sci-biology/bamtools/files/bamtools-2.4.0-unbundle.patch b/sci-biology/bamtools/files/bamtools-2.4.0-unbundle.patch
55 new file mode 100644
56 index 0000000..c07c59d
57 --- /dev/null
58 +++ b/sci-biology/bamtools/files/bamtools-2.4.0-unbundle.patch
59 @@ -0,0 +1,23 @@
60 +--- bamtools-2.3.0/src/api/CMakeLists.txt.ori 2013-08-27 18:00:43.000000000 +0200
61 ++++ bamtools-2.3.0/src/api/CMakeLists.txt 2013-08-27 18:00:47.000000000 +0200
62 +@@ -54,8 +54,8 @@
63 + target_link_libraries( BamTools-static ${APILibs} )
64 +
65 + # set library install destinations
66 +-install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin")
67 +-install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools")
68 ++install( TARGETS BamTools LIBRARY DESTINATION "lib${LIB_SUFFIX}" RUNTIME DESTINATION "bin")
69 ++install( TARGETS BamTools-static ARCHIVE DESTINATION "lib${LIB_SUFFIX}")
70 +
71 + # export API headers
72 + include(../ExportHeader.cmake)
73 +--- bamtools-2.3.0/src/CMakeLists.txt.ori 2013-08-27 18:03:10.000000000 +0200
74 ++++ bamtools-2.3.0/src/CMakeLists.txt 2013-08-27 18:03:23.000000000 +0200
75 +@@ -6,7 +6,6 @@
76 + # ==========================
77 +
78 + add_subdirectory( api )
79 +-add_subdirectory( third_party )
80 + add_subdirectory( toolkit )
81 + add_subdirectory( utils )
82 +