[gentoo-commits] gentoo-x86 commit in sci-biology/raxml: ChangeLog raxml-7.2.2.ebuild

[Andrey Kislyuk (weaver)]

weaver      09/09/04 19:12:50

  Modified:             ChangeLog
  Added:                raxml-7.2.2.ebuild
  Log:
  Version bump (but no mpi support in 7.2.2)
  (Portage version: 2.2_rc30/cvs/Linux x86_64)

Revision  Changes    Path
1.2                  sci-biology/raxml/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/raxml/ChangeLog?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/raxml/ChangeLog?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/raxml/ChangeLog?r1=1.1&r2=1.2

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/raxml/ChangeLog,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- ChangeLog	4 Sep 2009 03:04:43 -0000	1.1
+++ ChangeLog	4 Sep 2009 19:12:50 -0000	1.2
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/raxml
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/ChangeLog,v 1.1 2009/09/04 03:04:43 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/ChangeLog,v 1.2 2009/09/04 19:12:50 weaver Exp $
+
+*raxml-7.2.2 (04 Sep 2009)
+
+  04 Sep 2009; Andrey Kislyuk <weaver@g.o> +raxml-7.2.2.ebuild:
+  Version bump (but no mpi support in 7.2.2)
 
 *raxml-7.0.4 (03 Sep 2009)
 



1.1                  sci-biology/raxml/raxml-7.2.2.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/raxml/raxml-7.2.2.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/raxml/raxml-7.2.2.ebuild?rev=1.1&content-type=text/plain

Index: raxml-7.2.2.ebuild
===================================================================
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/raxml-7.2.2.ebuild,v 1.1 2009/09/04 19:12:50 weaver Exp $

EAPI="2"

inherit toolchain-funcs

DESCRIPTION="A Program for Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees"
HOMEPAGE="http://wwwkramer.in.tum.de/exelixis/software.html"
SRC_URI="http://wwwkramer.in.tum.de/exelixis/software/RAxML-${PV}.tar.bz2"

LICENSE="GPL-2"
SLOT="0"
IUSE="+threads"
KEYWORDS="~amd64 ~x86"

# errors compiling mpi for version 7.2.2. mpi is enabled by adding -DPARALLEL to CFLAGS
DEPEND="" # mpi? ( virtual/mpi )"
RDEPEND="${DEPEND}"

S="${WORKDIR}/RAxML-${PV}"

src_prepare() {
	sed -i -e 's/CFLAGS =/CFLAGS := ${CFLAGS}/' \
		-e 's/CC = gcc/CC = '$(tc-getCC)'/' \
		Makefile.* || die
}

src_compile() {
	emake -f Makefile.SSE3.gcc || die
	if use threads; then emake -f Makefile.SSE3.PTHREADS.gcc clean && emake -f Makefile.SSE3.PTHREADS.gcc || die; fi
}

src_install() {
	dobin raxmlHPC-SSE3 || die
	if use threads; then dobin raxmlHPC-PTHREADS-SSE3 || die; fi
}