Gentoo Archives: gentoo-commits

From: Horea Christian <horea.christ@×××××.com>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/Atlas_GapFill/
Date: Sun, 27 Sep 2020 22:43:38
Message-Id: 1601246600.445e6bd8a1fbcd0c93bd0509a467b6bb75a1d265.chymera@gentoo
1 commit: 445e6bd8a1fbcd0c93bd0509a467b6bb75a1d265
2 Author: Horea Christian <chr <AT> chymera <DOT> eu>
3 AuthorDate: Sun Sep 27 22:37:20 2020 +0000
4 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
5 CommitDate: Sun Sep 27 22:43:20 2020 +0000
6 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=445e6bd8
7
8 sci-biology/Atlas_GapFill: removed discontinued package
9
10 Package-Manager: Portage-3.0.8, Repoman-3.0.1
11 Signed-off-by: Horea Christian <chr <AT> chymera.eu>
12
13 sci-biology/Atlas_GapFill/Atlas_GapFill-2.2.ebuild | 23 ----------------------
14 sci-biology/Atlas_GapFill/metadata.xml | 12 -----------
15 2 files changed, 35 deletions(-)
16
17 diff --git a/sci-biology/Atlas_GapFill/Atlas_GapFill-2.2.ebuild b/sci-biology/Atlas_GapFill/Atlas_GapFill-2.2.ebuild
18 deleted file mode 100644
19 index 935134f09..000000000
20 --- a/sci-biology/Atlas_GapFill/Atlas_GapFill-2.2.ebuild
21 +++ /dev/null
22 @@ -1,23 +0,0 @@
23 -# Copyright 1999-2017 Gentoo Foundation
24 -# Distributed under the terms of the GNU General Public License v2
25 -
26 -EAPI=5
27 -
28 -DESCRIPTION="Close gaps using BWA-identified reads and reassemble"
29 -HOMEPAGE="https://www.hgsc.bcm.edu/software/atlas-gapfill"
30 -SRC_URI="
31 - https://www.hgsc.bcm.edu/sites/default/files/software/ATLAS_GapFill_V2_2/ATLAS_GapFill_V2.2_release.tar.bz2
32 - https://www.hgsc.bcm.edu/sites/default/files/software/ATLAS_GapFill_V2_2/README -> ATLAS_GapFill_V2_2.README"
33 -
34 -LICENSE="ATLAS"
35 -SLOT="0"
36 -KEYWORDS=""
37 -IUSE=""
38 -
39 -# is there an ebuild for newbler so we could add it to DEPEND?
40 -RDEPEND="
41 - dev-lang/perl
42 - sci-biology/phrap
43 - sci-biology/bwa
44 - sci-biology/velvet"
45 -DEPEND=""
46
47 diff --git a/sci-biology/Atlas_GapFill/metadata.xml b/sci-biology/Atlas_GapFill/metadata.xml
48 deleted file mode 100644
49 index 138cb7705..000000000
50 --- a/sci-biology/Atlas_GapFill/metadata.xml
51 +++ /dev/null
52 @@ -1,12 +0,0 @@
53 -<?xml version="1.0" encoding="UTF-8"?>
54 -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
55 -<pkgmetadata>
56 - <maintainer type="person">
57 - <email>mmokrejs@×××××××××××××××.cz</email>
58 - <name>Martin Mokrejs</name>
59 - </maintainer>
60 - <maintainer type="project">
61 - <email>sci-biology@g.o</email>
62 - <name>Gentoo Biology Project</name>
63 - </maintainer>
64 -</pkgmetadata>