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commit: 9acdbbd4c8debd771ac4a6e39c1073551f7ce43f |
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Author: Sam James <sam <AT> gentoo <DOT> org> |
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AuthorDate: Tue May 3 02:27:07 2022 +0000 |
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Commit: Sam James <sam <AT> gentoo <DOT> org> |
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CommitDate: Tue May 3 02:27:28 2022 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9acdbbd4 |
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|
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sci-libs/hdf5: add 1.12.2 |
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|
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Lots of correctness and sanitizer fixes in .2 so possibly helps |
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with the sparc bug (although we've applied a workaround now anyway). |
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|
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Bug: https://bugs.gentoo.org/686620 |
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Signed-off-by: Sam James <sam <AT> gentoo.org> |
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|
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sci-libs/hdf5/Manifest | 1 + |
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.../hdf5/files/hdf5-1.12.2-cmake_installdirs.patch | 163 +++++++++++++++++++++ |
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sci-libs/hdf5/hdf5-1.12.2.ebuild | 119 +++++++++++++++ |
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3 files changed, 283 insertions(+) |
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|
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diff --git a/sci-libs/hdf5/Manifest b/sci-libs/hdf5/Manifest |
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index bd0243d24944..54270f9e0c89 100644 |
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--- a/sci-libs/hdf5/Manifest |
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+++ b/sci-libs/hdf5/Manifest |
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@@ -1,2 +1,3 @@ |
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DIST hdf5-1.10.5.tar.bz2 8706317 BLAKE2B ac326be8fe4ccc4b0153f15bc7d65aa8f1adc2ae279d3980f57ed46722b754d3f36ecf1d6273c75e80ed1afd4bbf10c6b1c5d9408e1f83a4b2e397e7902a7d3c SHA512 769e43b8672e26fe24ed68da0228c010d3d9bc950ca09f0bc60707911a2f26f2f8415c8abc8ec06e07667148d8cdb3b0c7b3e7860d9b19739629c5dfd5ce73d4 |
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DIST hdf5-1.12.1.tar.bz2 9724309 BLAKE2B cc75ba497188b33972218d02a7601acad1a0443bdb934ecd1641ef5996076fe120e3b72dba3a99d99f919fb4e478d1e531414448de9a7b97a0afde58a4c7c23f SHA512 158a067ee284ccb9e2c4db12e9d37cf187d90d9ef1bed7a6303e2c3a2fd216d7b13a46c5f46018b097511281c4246156b6f917633ca88872f10f0ad04be285fd |
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+DIST hdf5-1.12.2.tar.bz2 10494264 BLAKE2B 99ca5b57f6f54fa044c909f0773de62b218c1f0ec3c011f88f3c227536dd719e77ddbe42d562b1214e8843e41d8fc56db499d7f122876fdd36ef31b235229cb7 SHA512 cbb4663570de76b11adb6bf62cfdb754371d31eeab04691479a5764a45207a9c1309665ab80f51c63a4b9b87354f9cbe6835cef506a9fd554d142c6d2bec21e5 |
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|
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diff --git a/sci-libs/hdf5/files/hdf5-1.12.2-cmake_installdirs.patch b/sci-libs/hdf5/files/hdf5-1.12.2-cmake_installdirs.patch |
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new file mode 100644 |
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index 000000000000..8218f31aea66 |
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--- /dev/null |
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+++ b/sci-libs/hdf5/files/hdf5-1.12.2-cmake_installdirs.patch |
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@@ -0,0 +1,163 @@ |
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+--- a/CMakeLists.txt |
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++++ b/CMakeLists.txt |
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+@@ -46,6 +46,13 @@ if (CMAKE_VERSION VERSION_LESS "3.14.0") |
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+ endif() |
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+ endif () |
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+ |
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++include (GNUInstallDirs) |
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++set (HDF5_INSTALL_BIN_DIR "${CMAKE_INSTALL_FULL_BINDIR}") |
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++set (HDF5_INSTALL_DATA_DIR "${CMAKE_INSTALL_FULL_DATADIR}") |
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++set (HDF5_INSTALL_DOC_DIR "${CMAKE_INSTALL_FULL_DOCDIR}") |
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++set (HDF5_INSTALL_INCLUDE_DIR "${CMAKE_INSTALL_FULL_INCLUDEDIR}") |
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++set (HDF5_INSTALL_LIB_DIR "${CMAKE_INSTALL_FULL_LIBDIR}") |
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++ |
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+ #----------------------------------------------------------------------------- |
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+ # Instructions for use : Sub-Project Build |
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+ # |
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+--- a/c++/src/CMakeLists.txt |
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++++ b/c++/src/CMakeLists.txt |
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+@@ -173,8 +173,8 @@ endif () |
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+ #----------------------------------------------------------------------------- |
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+ set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX}) |
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+ set (_PKG_CONFIG_EXEC_PREFIX \${prefix}) |
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+-set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib) |
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+-set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include) |
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++set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR}) |
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++set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR}) |
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+ set (_PKG_CONFIG_LIBNAME "${HDF5_CPP_LIB_CORENAME}") |
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+ set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}") |
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+ |
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+--- a/doxygen/CMakeLists.txt |
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++++ b/doxygen/CMakeLists.txt |
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+@@ -36,7 +36,7 @@ if (DOXYGEN_FOUND) |
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+ |
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+ install ( |
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+ DIRECTORY ${HDF5_BINARY_DIR}/hdf5lib_docs/html |
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+- DESTINATION ${HDF5_INSTALL_DATA_DIR} |
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++ DESTINATION ${HDF5_INSTALL_DOC_DIR} |
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+ COMPONENT Documents |
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+ ) |
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+ |
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+--- a/fortran/src/CMakeLists.txt |
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++++ b/fortran/src/CMakeLists.txt |
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+@@ -537,8 +537,8 @@ endif () |
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+ #----------------------------------------------------------------------------- |
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+ set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX}) |
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+ set (_PKG_CONFIG_EXEC_PREFIX \${prefix}) |
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+-set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib) |
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+-set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include) |
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++set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR}) |
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++set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR}) |
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+ set (_PKG_CONFIG_LIBNAME "${HDF5_F90_LIB_CORENAME}") |
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+ set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}") |
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+ |
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+--- a/hl/c++/src/CMakeLists.txt |
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++++ b/hl/c++/src/CMakeLists.txt |
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+@@ -91,8 +91,8 @@ endif () |
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+ #----------------------------------------------------------------------------- |
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+ set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX}) |
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+ set (_PKG_CONFIG_EXEC_PREFIX \${prefix}) |
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+-set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib) |
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+-set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include) |
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++set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR}) |
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++set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR}) |
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+ set (_PKG_CONFIG_LIBNAME "${HDF5_HL_CPP_LIB_CORENAME}") |
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+ set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}") |
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+ |
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+--- a/hl/fortran/src/CMakeLists.txt |
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++++ b/hl/fortran/src/CMakeLists.txt |
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+@@ -324,8 +324,8 @@ endif () |
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+ #----------------------------------------------------------------------------- |
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+ set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX}) |
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+ set (_PKG_CONFIG_EXEC_PREFIX \${prefix}) |
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+-set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib) |
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+-set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include) |
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++set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR}) |
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++set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR}) |
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+ set (_PKG_CONFIG_LIBNAME "${HDF5_HL_F90_LIB_CORENAME}") |
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+ set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}") |
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+ |
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+--- a/hl/src/CMakeLists.txt |
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++++ b/hl/src/CMakeLists.txt |
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+@@ -123,8 +123,8 @@ endif () |
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+ #----------------------------------------------------------------------------- |
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+ set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX}) |
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+ set (_PKG_CONFIG_EXEC_PREFIX \${prefix}) |
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+-set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib) |
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+-set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include) |
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++set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR}) |
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++set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR}) |
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+ set (_PKG_CONFIG_LIBNAME "${HDF5_HL_LIB_CORENAME}") |
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+ set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}") |
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+ |
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+--- a/src/CMakeLists.txt |
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++++ b/src/CMakeLists.txt |
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+@@ -1288,8 +1288,8 @@ endif () |
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+ #----------------------------------------------------------------------------- |
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+ set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX}) |
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+ set (_PKG_CONFIG_EXEC_PREFIX \${prefix}) |
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+-set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib) |
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+-set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include) |
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++set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR}) |
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++set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR}) |
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+ set (_PKG_CONFIG_LIBNAME "${HDF5_LIB_CORENAME}") |
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+ set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}") |
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+ |
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+--- a/CMakeInstallation.cmake |
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++++ b/CMakeInstallation.cmake |
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+@@ -31,7 +31,7 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED) |
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+ if (HDF5_EXPORTED_TARGETS) |
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+ install ( |
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+ EXPORT ${HDF5_EXPORTED_TARGETS} |
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+- DESTINATION ${HDF5_INSTALL_CMAKE_DIR} |
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++ DESTINATION ${HDF5_INSTALL_LIB_DIR}/cmake |
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+ FILE ${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-targets.cmake |
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+ NAMESPACE ${HDF_PACKAGE_NAMESPACE} |
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+ COMPONENT configinstall |
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+@@ -67,12 +67,12 @@ set (HDF5_VERSION_MINOR ${HDF5_PACKAGE_VERSION_MINOR}) |
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+ # Configure the hdf5-config.cmake file for the build directory |
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+ #----------------------------------------------------------------------------- |
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+ set (INCLUDE_INSTALL_DIR ${HDF5_INSTALL_INCLUDE_DIR}) |
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+-set (SHARE_INSTALL_DIR "${CMAKE_CURRENT_BINARY_DIR}/${HDF5_INSTALL_CMAKE_DIR}" ) |
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++set (SHARE_INSTALL_DIR "${CMAKE_CURRENT_BINARY_DIR}/${HDF5_INSTALL_LIB_DIR}/cmake" ) |
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+ set (CURRENT_BUILD_DIR "${CMAKE_CURRENT_BINARY_DIR}" ) |
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+ configure_package_config_file ( |
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+ ${HDF_RESOURCES_DIR}/hdf5-config.cmake.in |
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+ "${HDF5_BINARY_DIR}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config.cmake" |
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+- INSTALL_DESTINATION "${HDF5_INSTALL_CMAKE_DIR}" |
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++ INSTALL_DESTINATION "${HDF5_INSTALL_LIB_DIR}/cmake" |
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+ PATH_VARS INCLUDE_INSTALL_DIR SHARE_INSTALL_DIR CURRENT_BUILD_DIR |
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+ INSTALL_PREFIX "${CMAKE_CURRENT_BINARY_DIR}" |
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+ ) |
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+@@ -81,19 +81,19 @@ configure_package_config_file ( |
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+ # Configure the hdf5-config.cmake file for the install directory |
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+ #----------------------------------------------------------------------------- |
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+ set (INCLUDE_INSTALL_DIR ${HDF5_INSTALL_INCLUDE_DIR}) |
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+-set (SHARE_INSTALL_DIR "${CMAKE_INSTALL_PREFIX}/${HDF5_INSTALL_CMAKE_DIR}" ) |
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++set (SHARE_INSTALL_DIR "${CMAKE_INSTALL_PREFIX}/${HDF5_INSTALL_LIB_DIR}/cmake" ) |
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+ set (CURRENT_BUILD_DIR "${CMAKE_INSTALL_PREFIX}" ) |
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+ configure_package_config_file ( |
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+ ${HDF_RESOURCES_DIR}/hdf5-config.cmake.in |
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+ "${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config.cmake" |
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+- INSTALL_DESTINATION "${HDF5_INSTALL_CMAKE_DIR}" |
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++ INSTALL_DESTINATION "${HDF5_INSTALL_LIB_DIR}/cmake" |
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+ PATH_VARS INCLUDE_INSTALL_DIR SHARE_INSTALL_DIR CURRENT_BUILD_DIR |
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+ ) |
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+ |
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+ if (NOT HDF5_EXTERNALLY_CONFIGURED) |
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+ install ( |
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+ FILES ${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config.cmake |
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+- DESTINATION ${HDF5_INSTALL_CMAKE_DIR} |
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++ DESTINATION ${HDF5_INSTALL_LIB_DIR}/cmake |
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+ COMPONENT configinstall |
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+ ) |
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+ endif () |
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+@@ -109,7 +109,7 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED) |
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+ ) |
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+ install ( |
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+ FILES ${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config-version.cmake |
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+- DESTINATION ${HDF5_INSTALL_CMAKE_DIR} |
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++ DESTINATION ${HDF5_INSTALL_LIB_DIR}/cmake |
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+ COMPONENT configinstall |
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+ ) |
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+ endif () |
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|
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diff --git a/sci-libs/hdf5/hdf5-1.12.2.ebuild b/sci-libs/hdf5/hdf5-1.12.2.ebuild |
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new file mode 100644 |
202 |
index 000000000000..76d54a46d435 |
203 |
--- /dev/null |
204 |
+++ b/sci-libs/hdf5/hdf5-1.12.2.ebuild |
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@@ -0,0 +1,119 @@ |
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+# Copyright 1999-2022 Gentoo Authors |
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+# Distributed under the terms of the GNU General Public License v2 |
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+ |
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+EAPI=7 |
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+ |
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+FORTRAN_NEEDED="fortran" |
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+ |
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+inherit cmake flag-o-matic fortran-2 toolchain-funcs |
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+ |
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+MY_P="${PN}-${PV/_p/-patch}" |
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+MAJOR_P="${PN}-$(ver_cut 1-2)" |
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+ |
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+DESCRIPTION="General purpose library and file format for storing scientific data" |
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+HOMEPAGE="https://www.hdfgroup.org/HDF5/" |
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+SRC_URI="https://www.hdfgroup.org/ftp/HDF5/releases/${MAJOR_P}/${MY_P}/src/${MY_P}.tar.bz2" |
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+ |
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+LICENSE="NCSA-HDF" |
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+SLOT="0/${PV%%_p*}" |
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+KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc ~ppc64 ~riscv ~sparc ~x86 ~amd64-linux ~x86-linux" |
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+IUSE="cxx debug doc examples fortran +hl mpi szip test threads unsupported zlib" |
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+ |
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+REQUIRED_USE=" |
228 |
+ !unsupported? ( |
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+ mpi? ( !cxx !threads ) |
230 |
+ threads? ( !cxx !fortran !hl ) |
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+ )" |
232 |
+ |
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+RESTRICT="!test? ( test )" |
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+ |
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+RDEPEND=" |
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+ mpi? ( virtual/mpi[romio] ) |
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+ szip? ( virtual/szip ) |
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+ zlib? ( sys-libs/zlib:0= ) |
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+" |
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+DEPEND="${RDEPEND}" |
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+BDEPEND="doc? ( |
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+ app-doc/doxygen |
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+ virtual/latex-base |
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+)" |
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+ |
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+PATCHES=( |
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+ "${FILESDIR}"/${PN}-1.12.2-cmake_installdirs.patch |
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+) |
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+ |
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+S="${WORKDIR}/${MY_P}" |
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+ |
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+pkg_setup() { |
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+ use fortran && fortran-2_pkg_setup |
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+ |
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+ if use mpi; then |
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+ if has_version 'sci-libs/hdf5[-mpi]'; then |
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+ ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail." |
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+ ewarn "Try to uninstall the current hdf5 prior to enabling mpi support." |
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+ fi |
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+ export CC="mpicc" |
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+ use fortran && export FC="mpif90" |
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+ append-libs -lmpi |
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+ elif has_version 'sci-libs/hdf5[mpi]'; then |
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+ ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail." |
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+ ewarn "Try to uninstall the current hdf5 prior to disabling mpi support." |
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+ fi |
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+} |
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+ |
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+src_configure() { |
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+ use sparc && tc-is-gcc && append-flags -fno-tree-ccp # bug 686620 |
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+ local mycmakeargs=( |
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+ -DBUILD_STATIC_LIBS=OFF |
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+ -DFETCHCONTENT_FULLY_DISCONNECTED=ON |
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+ -DHDF5_BUILD_EXAMPLES=OFF |
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+ -DALLOW_UNSUPPORTED=$(usex unsupported) |
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+ -DBUILD_TESTING=$(usex test) |
277 |
+ -DHDF5_BUILD_CPP_LIB=$(usex cxx) |
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+ -DHDF5_BUILD_DOC=$(usex doc) |
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+ -DHDF5_BUILD_FORTRAN=$(usex fortran) |
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+ -DHDF5_BUILD_HL_LIB=$(usex hl) |
281 |
+ -DHDF5_ENABLE_CODESTACK=$(usex debug) |
282 |
+ -DHDF5_ENABLE_PARALLEL=$(usex mpi) |
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+ -DHDF5_ENABLE_SZIP_ENCODING=$(usex szip) |
284 |
+ -DHDF5_ENABLE_SZIP_SUPPORT=$(usex szip) |
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+ -DHDF5_ENABLE_THREADSAFE=$(usex threads) |
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+ -DHDF5_ENABLE_Z_LIB_SUPPORT=$(usex zlib) |
287 |
+ ) |
288 |
+ cmake_src_configure |
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+} |
290 |
+ |
291 |
+src_install() { |
292 |
+ cmake_src_install |
293 |
+ |
294 |
+ # TODO: generate functioning example runners from their respective |
295 |
+ # .in files - as of version 1.12.1 upstream only has it implemented |
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+ # for autoconf. |
297 |
+ if use examples; then |
298 |
+ # These are all useless outside the source tree |
299 |
+ rm -f {examples,c++/examples,fortran/examples}/{Makefile*,CMake*} |
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+ rm -f hl/{examples,c++/examples,fortran/examples}/{Makefile*,CMake*} |
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+ |
302 |
+ dodoc -r examples |
303 |
+ if use cxx; then |
304 |
+ docinto c++ |
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+ dodoc -r c++/examples |
306 |
+ fi |
307 |
+ if use fortran; then |
308 |
+ docinto fortran |
309 |
+ dodoc -r fortran/examples |
310 |
+ fi |
311 |
+ if use hl; then |
312 |
+ docinto hl |
313 |
+ dodoc -r hl/examples |
314 |
+ if use cxx; then |
315 |
+ docinto hl/c++ |
316 |
+ dodoc -r hl/c++/examples |
317 |
+ fi |
318 |
+ if use fortran; then |
319 |
+ docinto hl/fortran |
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+ dodoc -r hl/fortran/examples |
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+ fi |
322 |
+ fi |
323 |
+ fi |
324 |
+} |