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jlec 13/05/23 14:58:48 |
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|
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Modified: ChangeLog |
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Added: R-3.0.1.ebuild |
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Log: |
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dev-lang/R: Version Bump, #470858 |
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|
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(Portage version: 2.2.0_alpha176/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916) |
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|
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Revision Changes Path |
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1.216 dev-lang/R/ChangeLog |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-lang/R/ChangeLog?rev=1.216&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-lang/R/ChangeLog?rev=1.216&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-lang/R/ChangeLog?r1=1.215&r2=1.216 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/dev-lang/R/ChangeLog,v |
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retrieving revision 1.215 |
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retrieving revision 1.216 |
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diff -u -r1.215 -r1.216 |
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--- ChangeLog 10 Apr 2013 07:09:19 -0000 1.215 |
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+++ ChangeLog 23 May 2013 14:58:48 -0000 1.216 |
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@@ -1,6 +1,11 @@ |
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# ChangeLog for dev-lang/R |
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# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/dev-lang/R/ChangeLog,v 1.215 2013/04/10 07:09:19 patrick Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/dev-lang/R/ChangeLog,v 1.216 2013/05/23 14:58:48 jlec Exp $ |
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+ |
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+*R-3.0.1 (23 May 2013) |
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+ |
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+ 23 May 2013; Justin Lecher <jlec@g.o> +R-3.0.1.ebuild: |
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+ Version Bump, #470858 |
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|
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10 Apr 2013; Patrick Lauer <patrick@g.o> R-3.0.0.ebuild: |
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Force emake install to -j1 to avoid spurious failures #465352 |
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|
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|
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|
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1.1 dev-lang/R/R-3.0.1.ebuild |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-lang/R/R-3.0.1.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-lang/R/R-3.0.1.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: R-3.0.1.ebuild |
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=================================================================== |
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# Copyright 1999-2013 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/dev-lang/R/R-3.0.1.ebuild,v 1.1 2013/05/23 14:58:48 jlec Exp $ |
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|
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EAPI=5 |
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|
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inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs |
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|
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BCP=${PN}-20130129.bash_completion |
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DESCRIPTION="Language and environment for statistical computing and graphics" |
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HOMEPAGE="http://www.r-project.org/" |
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SRC_URI=" |
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mirror://cran/src/base/R-3/${P}.tar.gz |
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bash-completion? ( http://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2 )" |
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|
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LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" |
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SLOT="0" |
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KEYWORDS="~alpha ~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-fbsd ~x86-linux ~x64-macos" |
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IUSE="bash-completion cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X" |
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REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )" |
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|
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CDEPEND=" |
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app-arch/bzip2 |
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app-text/ghostscript-gpl |
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dev-libs/libpcre |
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virtual/blas |
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cairo? ( x11-libs/cairo[X] x11-libs/pango ) |
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icu? ( dev-libs/icu ) |
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jpeg? ( virtual/jpeg ) |
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lapack? ( virtual/lapack ) |
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perl? ( dev-lang/perl ) |
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png? ( media-libs/libpng ) |
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readline? ( sys-libs/readline ) |
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tk? ( dev-lang/tk ) |
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X? ( x11-libs/libXmu x11-misc/xdg-utils )" |
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|
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DEPEND="${CDEPEND} |
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virtual/pkgconfig |
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doc? ( |
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virtual/latex-base |
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dev-texlive/texlive-fontsrecommended |
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)" |
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|
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RDEPEND="${CDEPEND} |
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( || ( <sys-libs/zlib-1.2.5.1-r1 >=sys-libs/zlib-1.2.5.1-r2[minizip] ) ) |
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app-arch/xz-utils |
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java? ( >=virtual/jre-1.5 )" |
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|
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RESTRICT="minimal? ( test )" |
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|
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R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}" |
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|
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pkg_setup() { |
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if use openmp; then |
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FORTRAN_NEED_OPENMP=1 |
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tc-has-openmp || die "Please enable openmp support in your compiler" |
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fi |
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fortran-2_pkg_setup |
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filter-ldflags -Wl,-Bdirect -Bdirect |
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# avoid using existing R installation |
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unset R_HOME |
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# Temporary fix for bug #419761 |
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if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then |
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append-flags -fno-ipa-cp-clone |
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fi |
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} |
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|
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src_prepare() { |
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# gentoo bug #322965 (not applied upstream) |
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# https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14505 |
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epatch "${FILESDIR}"/${PN}-2.11.1-parallel.patch |
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|
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# respect ldflags (not applied upstream) |
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# https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14506 |
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epatch "${FILESDIR}"/${PN}-2.12.1-ldflags.patch |
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|
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# gentoo bug #383431 |
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# https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14951 |
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epatch "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch |
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|
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# https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14953 |
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epatch "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch |
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|
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# fix packages.html for doc (gentoo bug #205103) |
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sed -i \ |
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-e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ |
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src/library/tools/R/Rd.R || die |
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|
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# fix Rscript path when installed (gentoo bug #221061) |
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sed -i \ |
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-e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \ |
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src/unix/Makefile.in || die "sed unix Makefile failed" |
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|
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# fix HTML links to manual (gentoo bug #273957) |
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sed -i \ |
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-e 's:\.\./manual/:manual/:g' \ |
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$(grep -Flr ../manual/ doc) || die "sed for HTML links failed" |
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|
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use lapack && \ |
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export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" |
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|
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if use X; then |
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export R_BROWSER="$(type -p xdg-open)" |
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export R_PDFVIEWER="$(type -p xdg-open)" |
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fi |
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use perl && \ |
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export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" |
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|
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# don't search /usr/local |
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sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die |
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# Fix for Darwin (OS X) |
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if use prefix; then |
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if [[ ${CHOST} == *-darwin* ]] ; then |
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sed -i \ |
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-e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ |
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-e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ |
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-e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ |
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-e "/SHLIB_EXT/s/\.so/.dylib/" \ |
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configure.ac || die |
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# sort of "undo" 2.14.1-rmath-shared.patch |
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sed -i \ |
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-e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \ |
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src/nmath/standalone/Makefile.in || die |
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else |
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append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib" |
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fi |
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fi |
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AT_M4DIR=m4 eaclocal |
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eautoconf |
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} |
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|
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src_configure() { |
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econf \ |
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--enable-byte-compiled-packages \ |
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--enable-R-shlib \ |
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--disable-R-framework \ |
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--with-system-zlib \ |
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--with-system-bzlib \ |
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--with-system-pcre \ |
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--with-system-xz \ |
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--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ |
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--docdir="${EPREFIX}/usr/share/doc/${PF}" \ |
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rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ |
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$(use_enable nls) \ |
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$(use_enable openmp) \ |
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$(use_enable profile R-profiling) \ |
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$(use_enable profile memory-profiling) \ |
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$(use_enable static-libs static) \ |
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$(use_enable static-libs R-static-lib) \ |
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$(use_with cairo) \ |
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$(use_with icu ICU) \ |
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$(use_with jpeg jpeglib) \ |
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$(use_with lapack) \ |
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$(use_with !minimal recommended-packages) \ |
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$(use_with png libpng) \ |
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$(use_with readline) \ |
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$(use_with tiff libtiff) \ |
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$(use_with tk tcltk) \ |
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$(use_with X x) |
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} |
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|
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src_compile() { |
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export VARTEXFONTS="${T}/fonts" |
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emake AR="$(tc-getAR)" |
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emake -C src/nmath/standalone shared $(use static-libs && echo static) AR="$(tc-getAR)" |
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use doc && emake info pdf |
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} |
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|
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src_install() { |
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default |
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emake -j1 -C src/nmath/standalone DESTDIR="${D}" install |
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|
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if use doc; then |
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emake DESTDIR="${D}" install-info install-pdf |
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dosym ../manual /usr/share/doc/${PF}/html/manual |
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fi |
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|
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cat > 99R <<-EOF |
| 226 |
LDPATH=${R_DIR}/lib |
| 227 |
R_HOME=${R_DIR} |
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EOF |
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doenvd 99R |
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use bash-completion && newbashcomp "${WORKDIR}"/${BCP} ${PN} |
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# The buildsystem has a different understanding of install_names than what |
| 232 |
# we require. Since it builds modules like shared objects (wrong), many |
| 233 |
# objects (all modules) get an incorrect install_name. Fixing the build |
| 234 |
# system here is not really trivial. |
| 235 |
if [[ ${CHOST} == *-darwin* ]] ; then |
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local mod |
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pushd "${ED}"/usr/lib/R > /dev/null |
| 238 |
for mod in $(find . -name "*.dylib") ; do |
| 239 |
mod=${mod#./} |
| 240 |
install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \ |
| 241 |
"${mod}" |
| 242 |
done |
| 243 |
popd > /dev/null |
| 244 |
fi |
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} |
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|
| 247 |
pkg_postinst() { |
| 248 |
if use java; then |
| 249 |
einfo "Re-initializing java paths for ${P}" |
| 250 |
R CMD javareconf |
| 251 |
fi |
| 252 |
} |
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