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commit: 4b593053b1e496b4a4b29235285db701ac8bdead |
| 2 |
Author: Kacper Kowalik (Xarthisius) <xarthisius.kk <AT> gmail <DOT> com> |
| 3 |
AuthorDate: Thu Nov 17 13:47:02 2011 +0000 |
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Commit: Kacper Kowalik <xarthisius <AT> gentoo <DOT> org> |
| 5 |
CommitDate: Thu Nov 17 13:47:02 2011 +0000 |
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URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=4b593053 |
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|
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[sci-libs/hdf5] drop old |
| 9 |
|
| 10 |
--- |
| 11 |
sci-libs/hdf5/ChangeLog | 16 --- |
| 12 |
sci-libs/hdf5/files/hdf5-1.8.3-as-needed.patch | 41 -------- |
| 13 |
sci-libs/hdf5/files/hdf5-1.8.3-includes.patch | 11 -- |
| 14 |
sci-libs/hdf5/files/hdf5-1.8.3-noreturn.patch | 92 ----------------- |
| 15 |
sci-libs/hdf5/files/hdf5-1.8.4-gnutools.patch | 65 ------------ |
| 16 |
sci-libs/hdf5/files/hdf5-1.8.4-scaleoffset.patch | 18 ---- |
| 17 |
sci-libs/hdf5/hdf5-1.8.4-r2.ebuild | 117 ---------------------- |
| 18 |
sci-libs/hdf5/metadata.xml | 11 -- |
| 19 |
8 files changed, 0 insertions(+), 371 deletions(-) |
| 20 |
|
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diff --git a/sci-libs/hdf5/ChangeLog b/sci-libs/hdf5/ChangeLog |
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deleted file mode 100644 |
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index 0c0ffd4..0000000 |
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--- a/sci-libs/hdf5/ChangeLog |
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+++ /dev/null |
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@@ -1,16 +0,0 @@ |
| 27 |
-# ChangeLog for sci-libs/hdf5 |
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-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
| 29 |
-# $Header: $ |
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- |
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- 24 Jun 2011; Justin Lecher <jlec@g.o> hdf5-1.8.4-r2.ebuild: |
| 32 |
- Streamlined fortran-2 eclass usage |
| 33 |
- |
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- 21 Jun 2011; Justin Lecher <jlec@g.o> hdf5-1.8.4-r2.ebuild: |
| 35 |
- Added fortran-2.eclass support |
| 36 |
- |
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-*hdf5-1.8.4-r2 (19 Jan 2010) |
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- |
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- 19 Jan 2010; Justin Bronder <jsbronder@g.o> -hdf5-1.8.4-r1.ebuild, |
| 40 |
- +hdf5-1.8.4-r2.ebuild: |
| 41 |
- revbump to avoid conflicts with portage tree. |
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- |
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|
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diff --git a/sci-libs/hdf5/files/hdf5-1.8.3-as-needed.patch b/sci-libs/hdf5/files/hdf5-1.8.3-as-needed.patch |
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deleted file mode 100644 |
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index 677264b..0000000 |
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--- a/sci-libs/hdf5/files/hdf5-1.8.3-as-needed.patch |
| 48 |
+++ /dev/null |
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@@ -1,41 +0,0 @@ |
| 50 |
---- hdf5-1.8.3.orig/fortran/src/Makefile.am 2009-04-15 19:10:01.053733251 +0100 |
| 51 |
-+++ hdf5-1.8.3/fortran/src/Makefile.am 2009-04-15 19:12:49.874557795 +0100 |
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-@@ -66,6 +66,8 @@ |
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- H5If.c H5Lf.c H5Of.c H5Pf.c H5Rf.c H5Sf.c H5Tf.c H5Zf.c \ |
| 54 |
- $(PARALLEL_COND_SRC) |
| 55 |
- |
| 56 |
-+libhdf5_fortran_la_LIBADD = $(top_builddir)/src/libhdf5.la |
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-+ |
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- # h5fc is generated during configure. |
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- # Remove it only when distclean. |
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- DISTCLEANFILES=h5fc |
| 61 |
---- hdf5-1.8.3.orig/hl/fortran/src/Makefile.am 2009-04-15 19:10:01.245748616 +0100 |
| 62 |
-+++ hdf5-1.8.3/hl/fortran/src/Makefile.am 2009-04-15 19:30:56.042226227 +0100 |
| 63 |
-@@ -43,6 +43,7 @@ |
| 64 |
- |
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- libhdf5hl_fortran_la_SOURCES=H5LTfc.c H5IMfc.c H5IMcc.c H5TBfc.c H5LTff.f90 \ |
| 66 |
- H5IMff.f90 H5TBff.f90 |
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-+libhdf5hl_fortran_la_LIBADD=$(top_builddir)/hl/src/libhdf5_hl.la |
| 68 |
- |
| 69 |
- # Fortran module files can have different extensions and different names |
| 70 |
- # (e.g., different capitalizations) on different platforms. Write rules |
| 71 |
---- hdf5-1.8.3.orig/hl/c++/src/Makefile.am 2009-04-15 19:10:01.249750013 +0100 |
| 72 |
-+++ hdf5-1.8.3/hl/c++/src/Makefile.am 2009-04-15 20:16:08.812068687 +0100 |
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-@@ -35,6 +35,7 @@ |
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- # Source files for the library |
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- # At the moment, only the H5PT Packet Table has a C++ API. |
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- libhdf5_hl_cpp_la_SOURCES=H5PacketTable.cpp |
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-+libhdf5_hl_cpp_la_LIBADD=$(top_builddir)/hl/src/libhdf5_hl.la |
| 78 |
- |
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- # Public headers |
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- include_HEADERS=H5PacketTable.h |
| 81 |
---- hdf5-1.8.3.orig/hl/src/Makefile.am 2009-05-13 17:03:11.000000000 +0200 |
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-+++ hdf5-1.8.3/hl/src/Makefile.am 2009-09-10 19:22:57.489698969 +0200 |
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-@@ -31,6 +31,7 @@ |
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- libhdf5_hl_la_LDFLAGS= -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE) |
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- |
| 86 |
- libhdf5_hl_la_SOURCES=H5DS.c H5IM.c H5LT.c H5LTanalyze.c H5LTparse.c H5PT.c H5TB.c |
| 87 |
-+libhdf5_hl_la_LIBADD=$(top_builddir)/src/libhdf5.la |
| 88 |
- |
| 89 |
- # Public header files (to be installed) |
| 90 |
- include_HEADERS=hdf5_hl.h H5IMpublic.h H5LTpublic.h H5TBpublic.h H5DSpublic.h H5PTpublic.h |
| 91 |
|
| 92 |
diff --git a/sci-libs/hdf5/files/hdf5-1.8.3-includes.patch b/sci-libs/hdf5/files/hdf5-1.8.3-includes.patch |
| 93 |
deleted file mode 100644 |
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index 5e87f6c..0000000 |
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--- a/sci-libs/hdf5/files/hdf5-1.8.3-includes.patch |
| 96 |
+++ /dev/null |
| 97 |
@@ -1,11 +0,0 @@ |
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---- hdf5-1.8.3.orig/src/H5E.c 2009-04-15 19:10:01.081735486 +0100 |
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-+++ hdf5-1.8.3/src/H5E.c 2009-04-15 20:02:06.708712912 +0100 |
| 100 |
-@@ -54,6 +54,8 @@ |
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- /***********/ |
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- /* Headers */ |
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- /***********/ |
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-+#define _GNU_SOURCE |
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-+#include <stdio.h> |
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- #include "H5private.h" /* Generic Functions */ |
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- #include "H5Iprivate.h" /* IDs */ |
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- #include "H5Epkg.h" /* Error handling */ |
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|
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diff --git a/sci-libs/hdf5/files/hdf5-1.8.3-noreturn.patch b/sci-libs/hdf5/files/hdf5-1.8.3-noreturn.patch |
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deleted file mode 100644 |
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index 27b6f9b..0000000 |
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--- a/sci-libs/hdf5/files/hdf5-1.8.3-noreturn.patch |
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+++ /dev/null |
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@@ -1,92 +0,0 @@ |
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-diff -Nur hdf5-1.8.3.orig/c++/src/H5AbstractDs.cpp hdf5-1.8.3/c++/src/H5AbstractDs.cpp |
| 117 |
---- hdf5-1.8.3.orig/c++/src/H5AbstractDs.cpp 2009-04-15 19:10:01.061734089 +0100 |
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-+++ hdf5-1.8.3/c++/src/H5AbstractDs.cpp 2009-04-16 10:10:56.263885963 +0100 |
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-@@ -85,6 +85,8 @@ |
| 120 |
- else if (fromClass() == "Attribute") |
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- throw DataTypeIException("Attribute::getTypeClass", "H5Tget_class returns H5T_NO_CLASS"); |
| 122 |
- } |
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-+ |
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-+ return (type_class); |
| 125 |
- } |
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- |
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- //-------------------------------------------------------------------------- |
| 128 |
-diff -Nur hdf5-1.8.3.orig/hl/src/H5LTanalyze.c hdf5-1.8.3/hl/src/H5LTanalyze.c |
| 129 |
---- hdf5-1.8.3.orig/hl/src/H5LTanalyze.c 2009-04-15 19:10:01.221747499 +0100 |
| 130 |
-+++ hdf5-1.8.3/hl/src/H5LTanalyze.c 2009-04-16 10:10:56.267887639 +0100 |
| 131 |
-@@ -2329,7 +2329,7 @@ |
| 132 |
- return ret; |
| 133 |
- } |
| 134 |
- |
| 135 |
--int H5LTyyerror(char *msg) |
| 136 |
-+void H5LTyyerror(char *msg) |
| 137 |
- { |
| 138 |
- printf("ERROR: %s before \"%s\".\n", msg, yytext); |
| 139 |
- } |
| 140 |
-diff -Nur hdf5-1.8.3.orig/hl/src/H5LTanalyze.l hdf5-1.8.3/hl/src/H5LTanalyze.l |
| 141 |
---- hdf5-1.8.3.orig/hl/src/H5LTanalyze.l 2009-04-15 19:10:01.221747499 +0100 |
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-+++ hdf5-1.8.3/hl/src/H5LTanalyze.l 2009-04-16 10:10:56.267887639 +0100 |
| 143 |
-@@ -181,7 +181,7 @@ |
| 144 |
- return ret; |
| 145 |
- } |
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- |
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--int H5LTyyerror(char *msg) |
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-+void H5LTyyerror(char *msg) |
| 149 |
- { |
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- printf("ERROR: %s before \"%s\".\n", msg, yytext); |
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- } |
| 152 |
-diff -Nur hdf5-1.8.3.orig/hl/src/H5LTparse.c hdf5-1.8.3/hl/src/H5LTparse.c |
| 153 |
---- hdf5-1.8.3.orig/hl/src/H5LTparse.c 2009-04-15 19:10:01.221747499 +0100 |
| 154 |
-+++ hdf5-1.8.3/hl/src/H5LTparse.c 2009-04-16 10:10:56.267887639 +0100 |
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-@@ -64,7 +64,7 @@ |
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- #include<hdf5.h> |
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- |
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- extern int yylex(); |
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--extern int yyerror(char *); |
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-+extern void yyerror(char *); |
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- |
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- #define STACK_SIZE 16 |
| 163 |
- |
| 164 |
-diff -Nur hdf5-1.8.3.orig/test/dt_arith.c hdf5-1.8.3/test/dt_arith.c |
| 165 |
---- hdf5-1.8.3.orig/test/dt_arith.c 2009-04-15 19:10:01.121739118 +0100 |
| 166 |
-+++ hdf5-1.8.3/test/dt_arith.c 2009-04-16 10:10:56.271887918 +0100 |
| 167 |
-@@ -3408,6 +3408,7 @@ |
| 168 |
- else if(run_test==TEST_DENORM || run_test==TEST_SPECIAL) |
| 169 |
- return 1; |
| 170 |
- #endif |
| 171 |
-+ return 1; |
| 172 |
- } |
| 173 |
- |
| 174 |
- |
| 175 |
-diff -Nur hdf5-1.8.3.orig/tools/h5dump/h5dump.c hdf5-1.8.3/tools/h5dump/h5dump.c |
| 176 |
---- hdf5-1.8.3.orig/tools/h5dump/h5dump.c 2009-04-15 19:10:01.141740794 +0100 |
| 177 |
-+++ hdf5-1.8.3/tools/h5dump/h5dump.c 2009-04-16 10:10:56.275888757 +0100 |
| 178 |
-@@ -602,6 +602,7 @@ |
| 179 |
- * |
| 180 |
- *------------------------------------------------------------------------- |
| 181 |
- */ |
| 182 |
-+static void leave(int ret) __attribute__ ((__noreturn__)); |
| 183 |
- static void |
| 184 |
- leave(int ret) |
| 185 |
- { |
| 186 |
-diff -Nur hdf5-1.8.3.orig/tools/h5ls/h5ls.c hdf5-1.8.3/tools/h5ls/h5ls.c |
| 187 |
---- hdf5-1.8.3.orig/tools/h5ls/h5ls.c 2009-04-15 19:10:01.165741353 +0100 |
| 188 |
-+++ hdf5-1.8.3/tools/h5ls/h5ls.c 2009-04-16 10:10:56.279888477 +0100 |
| 189 |
-@@ -2147,6 +2147,7 @@ |
| 190 |
- * |
| 191 |
- *------------------------------------------------------------------------- |
| 192 |
- */ |
| 193 |
-+static void leave(int ret) __attribute__ ((__noreturn__)); |
| 194 |
- static void |
| 195 |
- leave(int ret) |
| 196 |
- { |
| 197 |
-diff -Nur hdf5-1.8.3.orig/tools/h5stat/h5stat.c hdf5-1.8.3/tools/h5stat/h5stat.c |
| 198 |
---- hdf5-1.8.3.orig/tools/h5stat/h5stat.c 2009-04-15 19:10:01.181742750 +0100 |
| 199 |
-+++ hdf5-1.8.3/tools/h5stat/h5stat.c 2009-04-16 10:10:56.279888477 +0100 |
| 200 |
-@@ -181,6 +181,7 @@ |
| 201 |
- { NULL, 0, '\0' } |
| 202 |
- }; |
| 203 |
- |
| 204 |
-+static void leave(int ret) __attribute__ ((__noreturn__)); |
| 205 |
- static void |
| 206 |
- leave(int ret) |
| 207 |
- { |
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|
| 209 |
diff --git a/sci-libs/hdf5/files/hdf5-1.8.4-gnutools.patch b/sci-libs/hdf5/files/hdf5-1.8.4-gnutools.patch |
| 210 |
deleted file mode 100644 |
| 211 |
index 2843afb..0000000 |
| 212 |
--- a/sci-libs/hdf5/files/hdf5-1.8.4-gnutools.patch |
| 213 |
+++ /dev/null |
| 214 |
@@ -1,65 +0,0 @@ |
| 215 |
---- hdf5-1.8.4.orig/src/Makefile.am 2009-11-10 22:12:02.000000000 +0100 |
| 216 |
-+++ hdf5-1.8.4/src/Makefile.am 2009-12-03 13:13:36.902083292 +0100 |
| 217 |
-@@ -26,14 +26,52 @@ |
| 218 |
- # Use -g to force no optimization since many compilers (e.g., Intel) takes |
| 219 |
- # a long time to compile it with any optimization on. H5detect is used |
| 220 |
- # to generate H5Tinit.c once. So, optimization is not critical. |
| 221 |
-+# -O0 is required for >= gcc4.3 |
| 222 |
- noinst_PROGRAMS = H5detect |
| 223 |
--H5detect_CFLAGS = -g $(AM_CFLAGS) |
| 224 |
-+H5detect_CFLAGS = -g -O0 |
| 225 |
-+ |
| 226 |
-+# Automake doesn't have a way to build with no optimization |
| 227 |
-+# See http://sources.redhat.com/ml/automake/2002-08/msg00082.html |
| 228 |
-+# This is the automake-produced rule with $(CFLAGS) removed |
| 229 |
-+H5detect_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ |
| 230 |
-+ --mode=link $(CCLD) $(H5detect_CFLAGS) $(AM_LDFLAGS) \ |
| 231 |
-+ $(LDFLAGS) -o $@ |
| 232 |
-+ |
| 233 |
-+H5detect-H5detect.o: H5detect.c |
| 234 |
-+@am__fastdepCC_TRUE@ $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(H5detect_CFLAGS) -MT H5detect-H5detect.o -MD -MP -MF $(DEPDIR)/H5detect-H5detect.Tpo -c -o H5detect-H5detect.o `test -f 'H5detect.c' || echo '$(srcdir)/'`H5detect.c |
| 235 |
-+@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/H5detect-H5detect.Tpo $(DEPDIR)/H5detect-H5detect.Po |
| 236 |
-+@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='H5detect.c' object='H5detect-H5detect.o' libtool=no @AMDEPBACKSLASH@ |
| 237 |
-+@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ |
| 238 |
-+@am__fastdepCC_FALSE@ $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(H5detect_CFLAGS) -c -o H5detect-H5detect.o `test -f 'H5detect.c' || echo '$(srcdir)/'`H5detect.c |
| 239 |
-+ |
| 240 |
-+H5detect-H5detect.obj: H5detect.c |
| 241 |
-+@am__fastdepCC_TRUE@ $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(H5detect_CFLAGS) -MT H5detect-H5detect.obj -MD -MP -MF $(DEPDIR)/H5detect-H5detect.Tpo -c -o H5detect-H5detect.obj `if test -f 'H5detect.c'; then $(CYGPATH_W) 'H5detect.c'; else $(CYGPATH_W) '$(srcdir)/H5detect.c'; fi` |
| 242 |
-+@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/H5detect-H5detect.Tpo $(DEPDIR)/H5detect-H5detect.Po |
| 243 |
-+@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='H5detect.c' object='H5detect-H5detect.obj' libtool=no @AMDEPBACKSLASH@ |
| 244 |
-+@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ |
| 245 |
-+@am__fastdepCC_FALSE@ $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(H5detect_CFLAGS) -c -o H5detect-H5detect.obj `if test -f 'H5detect.c'; then $(CYGPATH_W) 'H5detect.c'; else $(CYGPATH_W) '$(srcdir)/H5detect.c'; fi` |
| 246 |
-+ |
| 247 |
-+noinst_LTLIBRARIES = libH5Tconv.la |
| 248 |
-+libH5Tconv_la_SOURCES = H5Tconv.c |
| 249 |
-+libH5Tconv_la_CFLAGS = -g -O0 |
| 250 |
-+libH5Tconv_la_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) \ |
| 251 |
-+ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(libH5Tconv_la_CFLAGS) \ |
| 252 |
-+ $(AM_LDFLAGS) $(LDFLAGS) -o $@ |
| 253 |
-+ |
| 254 |
-+libH5Tconv_la-H5Tconv.lo: H5Tconv.c |
| 255 |
-+@am__fastdepCC_TRUE@ $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libH5Tconv_la_CFLAGS) -MT libH5Tconv_la-H5Tconv.lo -MD -MP -MF $(DEPDIR)/libH5Tconv_la-H5Tconv.Tpo -c -o libH5Tconv_la-H5Tconv.lo `test -f 'H5Tconv.c' || echo '$(srcdir)/'`H5Tconv.c |
| 256 |
-+@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/libH5Tconv_la-H5Tconv.Tpo $(DEPDIR)/libH5Tconv_la-H5Tconv.Plo |
| 257 |
-+@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='H5Tconv.c' object='libH5Tconv_la-H5Tconv.lo' libtool=yes @AMDEPBACKSLASH@ |
| 258 |
-+@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ |
| 259 |
-+@am__fastdepCC_FALSE@ $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libH5Tconv_la_CFLAGS) -c -o libH5Tconv_la-H5Tconv.lo `test -f 'H5Tconv.c' || echo '$(srcdir)/'`H5Tconv.c |
| 260 |
-+ |
| 261 |
- |
| 262 |
- # Our main target, the HDF5 library |
| 263 |
- lib_LTLIBRARIES=libhdf5.la |
| 264 |
- |
| 265 |
- # Add libtool numbers to the HDF5 library (from config/lt_vers.am) |
| 266 |
- libhdf5_la_LDFLAGS= -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE) $(AM_LDFLAGS) |
| 267 |
-+libhdf5_la_LIBADD = libH5Tconv.la |
| 268 |
- |
| 269 |
- # H5Tinit.c is a generated file, and should be cleaned. |
| 270 |
- MOSTLYCLEANFILES=H5Tinit.c |
| 271 |
-@@ -89,7 +127,7 @@ |
| 272 |
- H5S.c H5Sall.c H5Sdbg.c H5Shyper.c H5Smpio.c H5Snone.c H5Spoint.c \ |
| 273 |
- H5Sselect.c H5Stest.c H5SL.c H5SM.c H5SMbtree2.c \ |
| 274 |
- H5SMcache.c H5SMtest.c H5ST.c \ |
| 275 |
-- H5T.c H5Tarray.c H5Tbit.c H5Tcommit.c H5Tcompound.c H5Tconv.c \ |
| 276 |
-+ H5T.c H5Tarray.c H5Tbit.c H5Tcommit.c H5Tcompound.c \ |
| 277 |
- H5Tcset.c H5Tdbg.c H5Tdeprec.c H5Tenum.c H5Tfields.c \ |
| 278 |
- H5Tfixed.c \ |
| 279 |
- H5Tfloat.c H5Tinit.c H5Tnative.c H5Toffset.c H5Toh.c \ |
| 280 |
|
| 281 |
diff --git a/sci-libs/hdf5/files/hdf5-1.8.4-scaleoffset.patch b/sci-libs/hdf5/files/hdf5-1.8.4-scaleoffset.patch |
| 282 |
deleted file mode 100644 |
| 283 |
index be52280..0000000 |
| 284 |
--- a/sci-libs/hdf5/files/hdf5-1.8.4-scaleoffset.patch |
| 285 |
+++ /dev/null |
| 286 |
@@ -1,18 +0,0 @@ |
| 287 |
---- hdf5-1.8.4.orig/test/dsets.c 2009-11-10 22:11:59.000000000 +0100 |
| 288 |
-+++ hdf5-1.8.4/test/dsets.c 2009-12-03 13:13:42.239327244 +0100 |
| 289 |
-@@ -7402,10 +7402,14 @@ |
| 290 |
- nerrors += (test_nbit_compound_3(file) < 0 ? 1 : 0); |
| 291 |
- nerrors += (test_scaleoffset_int(file) < 0 ? 1 : 0); |
| 292 |
- nerrors += (test_scaleoffset_int_2(file) < 0 ? 1 : 0); |
| 293 |
-+ /* These tests fail even if dsets is compiled with -O0, |
| 294 |
-+ * which is recommended solution by HDFGROUP. |
| 295 |
-+ * Problem exists at least since version 1.4.x and occurs |
| 296 |
-+ * on different compilers and architectures. |
| 297 |
- nerrors += (test_scaleoffset_float(file) < 0 ? 1 : 0); |
| 298 |
- nerrors += (test_scaleoffset_float_2(file) < 0 ? 1 : 0); |
| 299 |
- nerrors += (test_scaleoffset_double(file) < 0 ? 1 : 0); |
| 300 |
-- nerrors += (test_scaleoffset_double_2(file) < 0 ? 1 : 0); |
| 301 |
-+ nerrors += (test_scaleoffset_double_2(file) < 0 ? 1 : 0); */ |
| 302 |
- nerrors += (test_multiopen (file) < 0 ? 1 : 0); |
| 303 |
- nerrors += (test_types(file) < 0 ? 1 : 0); |
| 304 |
- nerrors += (test_userblock_offset(envval, my_fapl) < 0 ? 1 : 0); |
| 305 |
|
| 306 |
diff --git a/sci-libs/hdf5/hdf5-1.8.4-r2.ebuild b/sci-libs/hdf5/hdf5-1.8.4-r2.ebuild |
| 307 |
deleted file mode 100644 |
| 308 |
index 71fc58e..0000000 |
| 309 |
--- a/sci-libs/hdf5/hdf5-1.8.4-r2.ebuild |
| 310 |
+++ /dev/null |
| 311 |
@@ -1,117 +0,0 @@ |
| 312 |
-# Copyright 1999-2011 Gentoo Foundation |
| 313 |
-# Distributed under the terms of the GNU General Public License v2 |
| 314 |
-# $Header: $ |
| 315 |
- |
| 316 |
-EAPI=3 |
| 317 |
- |
| 318 |
-MPI_PKG_USE_ROMIO=1 |
| 319 |
- |
| 320 |
-inherit autotools eutils fortran-2 mpi |
| 321 |
- |
| 322 |
-DESCRIPTION="General purpose library and file format for storing scientific data" |
| 323 |
-HOMEPAGE="http://www.hdfgroup.org/HDF5/" |
| 324 |
-SRC_URI="http://www.hdfgroup.org/ftp/HDF5/current/src/${P}.tar.gz" |
| 325 |
- |
| 326 |
-LICENSE="NCSA-HDF" |
| 327 |
-SLOT="0" |
| 328 |
-KEYWORDS="~alpha ~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86" |
| 329 |
- |
| 330 |
-IUSE="cxx examples fortran mpi szip threads zlib" |
| 331 |
- |
| 332 |
-RDEPEND=" |
| 333 |
- fortran? ( virtual/fortran ) |
| 334 |
- mpi? ( $(mpi_pkg_deplist) ) |
| 335 |
- szip? ( >=sci-libs/szip-2.1 ) |
| 336 |
- zlib? ( sys-libs/zlib )" |
| 337 |
- |
| 338 |
-DEPEND="${RDEPEND} |
| 339 |
- sys-devel/libtool:2 |
| 340 |
- sys-process/time" |
| 341 |
- |
| 342 |
-pkg_setup() { |
| 343 |
- fortran && fortran-2_pkg_setup |
| 344 |
- if use mpi; then |
| 345 |
- if use cxx; then |
| 346 |
- ewarn "Simultaneous mpi and cxx is not supported by ${PN}" |
| 347 |
- ewarn "Will disable cxx interface" |
| 348 |
- fi |
| 349 |
- export CC=$(mpi_pkg_cc) |
| 350 |
- if use fortran; then |
| 351 |
- export FC=$(mpi_pkg_fc) |
| 352 |
- fi |
| 353 |
- fi |
| 354 |
-} |
| 355 |
- |
| 356 |
-src_prepare() { |
| 357 |
- epatch \ |
| 358 |
- "${FILESDIR}"/${PN}-1.8.3-as-needed.patch \ |
| 359 |
- "${FILESDIR}"/${PN}-1.8.3-includes.patch \ |
| 360 |
- "${FILESDIR}"/${PN}-1.8.3-noreturn.patch \ |
| 361 |
- "${FILESDIR}"/${P}-gnutools.patch \ |
| 362 |
- "${FILESDIR}"/${P}-scaleoffset.patch |
| 363 |
- |
| 364 |
- # respect gentoo examples directory |
| 365 |
- sed \ |
| 366 |
- -e 's:$(docdir)/hdf5:$(DESTDIR)/$(docdir):' \ |
| 367 |
- -i $(find . -name Makefile.am) || die |
| 368 |
- sed \ |
| 369 |
- -e '/docdir/d' \ |
| 370 |
- -i config/commence.am || die |
| 371 |
- eautoreconf |
| 372 |
- # enable shared libs by default for h5cc config utility |
| 373 |
- sed -i -e "s/SHLIB:-no/SHLIB:-yes/g" tools/misc/h5cc.in \ |
| 374 |
- || die "sed h5cc.in failed" |
| 375 |
-} |
| 376 |
- |
| 377 |
-src_configure() { |
| 378 |
- # threadsafe incompatible with many options |
| 379 |
- local myconf="--disable-threadsafe" |
| 380 |
- use threads && ! use fortran && ! use cxx && ! use mpi \ |
| 381 |
- && myconf="--enable-threadsafe" |
| 382 |
- |
| 383 |
- if use mpi; then |
| 384 |
- myconf="${myconf} --disable-cxx" |
| 385 |
- else |
| 386 |
- # workaround for bug 285148 |
| 387 |
- if use cxx; then |
| 388 |
- myconf="${myconf} $(use_enable cxx) CXX=$(tc-getCXX)" |
| 389 |
- fi |
| 390 |
- if use fortran; then |
| 391 |
- myconf="${myconf} FC=$(tc-getFC)" |
| 392 |
- fi |
| 393 |
- fi |
| 394 |
- |
| 395 |
- mpi_pkg_set_ld_library_path |
| 396 |
- econf $(mpi_econf_args) \ |
| 397 |
- --disable-sharedlib-rpath \ |
| 398 |
- --enable-production \ |
| 399 |
- --enable-strict-format-checks \ |
| 400 |
- --docdir=/usr/share/doc/${PF} \ |
| 401 |
- --enable-deprecated-symbols \ |
| 402 |
- --enable-shared \ |
| 403 |
- $(use_enable fortran) \ |
| 404 |
- $(use_enable mpi parallel) \ |
| 405 |
- $(use_with szip szlib) \ |
| 406 |
- $(use_with threads pthread) \ |
| 407 |
- $(use_with zlib) \ |
| 408 |
- ${myconf} |
| 409 |
-} |
| 410 |
- |
| 411 |
-src_compile() { |
| 412 |
- mpi_pkg_set_ld_library_path |
| 413 |
- emake || die |
| 414 |
-} |
| 415 |
- |
| 416 |
-src_install() { |
| 417 |
- emake DESTDIR="${D}" install || die "emake install failed" |
| 418 |
- mpi_dodoc README.txt |
| 419 |
- if use examples; then |
| 420 |
- emake DESTDIR="${D}" install-examples \ |
| 421 |
- || die "emake install examples failed" |
| 422 |
- fi |
| 423 |
-} |
| 424 |
- |
| 425 |
-src_test() { |
| 426 |
- mpi_pkg_set_ld_library_path |
| 427 |
- emake check || die |
| 428 |
-} |
| 429 |
|
| 430 |
diff --git a/sci-libs/hdf5/metadata.xml b/sci-libs/hdf5/metadata.xml |
| 431 |
deleted file mode 100644 |
| 432 |
index dbff4da..0000000 |
| 433 |
--- a/sci-libs/hdf5/metadata.xml |
| 434 |
+++ /dev/null |
| 435 |
@@ -1,11 +0,0 @@ |
| 436 |
-<?xml version="1.0" encoding="UTF-8"?> |
| 437 |
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 438 |
-<pkgmetadata> |
| 439 |
-<herd>sci</herd> |
| 440 |
-<longdescription> |
| 441 |
- HDF5 is a file format and library for storing scientific data. HDF5 |
| 442 |
- was designed and implemented to address the deficiencies of HDF4.x. It |
| 443 |
- has a more powerful and flexible data model, supports files larger |
| 444 |
- than 2 GB, and supports parallel I/O. |
| 445 |
-</longdescription> |
| 446 |
-</pkgmetadata> |
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