[gentoo-commits] proj/sci:master commit in: dev-python/metakernel/, sci-chemistry/rosetta-tools/, sci-biology/manatee-igs/, ...

[Justin Lecher]

commit:     5a9dcced5751603c1e56bbdf30dcdd39edeb8a53
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Sep 30 14:21:21 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Sep 30 14:21:21 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=5a9dcced

Add missing remote-ids to metadata

Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 dev-python/ffc/metadata.xml                  |  5 +++--
 dev-python/fiat/metadata.xml                 |  3 ++-
 dev-python/instant/metadata.xml              |  3 ++-
 dev-python/ipykernel/metadata.xml            |  3 ++-
 dev-python/metakernel/metadata.xml           |  3 ++-
 dev-python/metakernel_bash/metadata.xml      |  3 ++-
 dev-python/metakernel_python/metadata.xml    |  3 ++-
 dev-python/pythonqt/metadata.xml             |  5 ++++-
 dev-python/ufl/metadata.xml                  |  3 ++-
 dev-tcltk/img_rotate/metadata.xml            |  5 ++++-
 media-gfx/brlcad/metadata.xml                |  9 ++++++---
 sci-biology/BBmap/metadata.xml               |  5 ++++-
 sci-biology/BamView/metadata.xml             |  5 ++++-
 sci-biology/CONTIGuator/metadata.xml         |  5 ++++-
 sci-biology/EBARDenovo/metadata.xml          |  5 ++++-
 sci-biology/FLASH/metadata.xml               |  5 ++++-
 sci-biology/MeV/metadata.xml                 | 13 ++++++++-----
 sci-biology/RSeQC/metadata.xml               |  5 ++++-
 sci-biology/Ray/metadata.xml                 |  5 ++++-
 sci-biology/SolexaQA/metadata.xml            |  5 ++++-
 sci-biology/TransDecoder/metadata.xml        |  3 ++-
 sci-biology/VarScan/metadata.xml             |  5 ++++-
 sci-biology/abacas/metadata.xml              |  5 ++++-
 sci-biology/amos/metadata.xml                |  7 +++++--
 sci-biology/bambus/metadata.xml              |  5 ++++-
 sci-biology/clview/metadata.xml              |  5 ++++-
 sci-biology/cortex_var/metadata.xml          |  5 ++++-
 sci-biology/estscan/metadata.xml             |  5 ++++-
 sci-biology/fsa/metadata.xml                 |  5 ++++-
 sci-biology/gbrowse/metadata.xml             |  7 +++++--
 sci-biology/genomeview-bin/metadata.xml      |  5 ++++-
 sci-biology/glean/metadata.xml               |  5 ++++-
 sci-biology/inGAP-bin/metadata.xml           |  5 ++++-
 sci-biology/jtreeview/metadata.xml           |  5 ++++-
 sci-biology/lucy/metadata.xml                |  5 ++++-
 sci-biology/manatee-igs/metadata.xml         |  5 ++++-
 sci-biology/manatee-jcvi/metadata.xml        |  5 ++++-
 sci-biology/parafly/metadata.xml             |  5 ++++-
 sci-biology/samstat/metadata.xml             |  5 ++++-
 sci-biology/scaffold_builder/metadata.xml    |  5 ++++-
 sci-biology/skewer-bin/metadata.xml          |  5 ++++-
 sci-biology/staden/metadata.xml              |  5 ++++-
 sci-biology/swissknife/metadata.xml          |  5 ++++-
 sci-biology/tgicl/metadata.xml               |  5 ++++-
 sci-biology/trowel/metadata.xml              |  5 ++++-
 sci-biology/wgs-assembler/metadata.xml       |  5 ++++-
 sci-chemistry/NMRdyn/metadata.xml            |  5 ++++-
 sci-chemistry/openbabel-java/metadata.xml    |  5 ++++-
 sci-chemistry/openbabel-perl/metadata.xml    |  5 ++++-
 sci-chemistry/openbabel-python/metadata.xml  |  5 ++++-
 sci-chemistry/openbabel-ruby/metadata.xml    |  5 ++++-
 sci-chemistry/openbabel/metadata.xml         |  5 ++++-
 sci-chemistry/pesto/metadata.xml             |  5 ++++-
 sci-chemistry/pymol-apbs-plugin/metadata.xml |  7 +++++--
 sci-chemistry/rosetta-tools/metadata.xml     |  5 ++++-
 sci-libs/ghmm/metadata.xml                   |  5 ++++-
 sci-libs/libcgnsoo/metadata.xml              |  7 +++++--
 sci-libs/nipype/metadata.xml                 |  7 +++++--
 sci-libs/pydicom/metadata.xml                |  5 ++++-
 sci-libs/spglib/metadata.xml                 |  5 ++++-
 sci-libs/starparse/metadata.xml              |  5 ++++-
 sci-libs/vxl/metadata.xml                    |  7 +++++--
 sci-mathematics/mdp/metadata.xml             |  9 ++++++---
 sci-mathematics/ufc/metadata.xml             |  5 +++--
 sci-misc/kaldi/metadata.xml                  |  5 ++++-
 sci-misc/praat/metadata.xml                  |  7 +++++--
 sci-physics/genfit/metadata.xml              | 13 ++++++++-----
 sci-visualization/nodemon/metadata.xml       |  7 +++++--
 sci-visualization/vtkPOFFReader/metadata.xml |  5 ++++-
 sys-cluster/modules/metadata.xml             |  7 +++++--
 sys-cluster/pyslice/metadata.xml             |  5 +++--
 71 files changed, 286 insertions(+), 95 deletions(-)

diff --git a/dev-python/ffc/metadata.xml b/dev-python/ffc/metadata.xml
index 893659e..212522c 100644
--- a/dev-python/ffc/metadata.xml
+++ b/dev-python/ffc/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
 	<herd>sci</herd>
@@ -9,8 +9,9 @@
 		combine generality with efficiency; the form can be given in
 		mathematical notation and the generated code is as efficient as
 		hand-optimized code.
-   </longdescription>
+	</longdescription>
 	<upstream>
 		<remote-id type="bitbucket">fenics-project/ffc</remote-id>
+		<remote-id type="launchpad">ffc</remote-id>
 	</upstream>
 </pkgmetadata>

diff --git a/dev-python/fiat/metadata.xml b/dev-python/fiat/metadata.xml
index b9c29fa..33066d9 100644
--- a/dev-python/fiat/metadata.xml
+++ b/dev-python/fiat/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
 	<herd>sci</herd>
@@ -14,5 +14,6 @@
 	</longdescription>
 	<upstream>
 		<remote-id type="bitbucket">fenics-project/fiat</remote-id>
+		<remote-id type="launchpad">fiat</remote-id>
 	</upstream>
 </pkgmetadata>

diff --git a/dev-python/instant/metadata.xml b/dev-python/instant/metadata.xml
index 37fa71c..fd75a33 100644
--- a/dev-python/instant/metadata.xml
+++ b/dev-python/instant/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
 	<herd>sci</herd>
@@ -9,5 +9,6 @@
 	</longdescription>
 	<upstream>
 		<remote-id type="bitbucket">fenics-project/instant</remote-id>
+		<remote-id type="launchpad">instant</remote-id>
 	</upstream>
 </pkgmetadata>

diff --git a/dev-python/ipykernel/metadata.xml b/dev-python/ipykernel/metadata.xml
index e13dd8b..52d077b 100644
--- a/dev-python/ipykernel/metadata.xml
+++ b/dev-python/ipykernel/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci</herd>
@@ -7,5 +7,6 @@
   </longdescription>
   <upstream>
     <remote-id type="pypi">ipykernel</remote-id>
+    <remote-id type="github">ipython/ipykernel</remote-id>
   </upstream>
 </pkgmetadata>

diff --git a/dev-python/metakernel/metadata.xml b/dev-python/metakernel/metadata.xml
index be095ae..b6105fd 100644
--- a/dev-python/metakernel/metadata.xml
+++ b/dev-python/metakernel/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci</herd>
@@ -9,5 +9,6 @@
   </longdescription>
   <upstream>
     <remote-id type="pypi">metakernel</remote-id>
+    <remote-id type="github">Calysto/metakernel</remote-id>
   </upstream>
 </pkgmetadata>

diff --git a/dev-python/metakernel_bash/metadata.xml b/dev-python/metakernel_bash/metadata.xml
index 9e6119a..9cfacff 100644
--- a/dev-python/metakernel_bash/metadata.xml
+++ b/dev-python/metakernel_bash/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci</herd>
@@ -7,5 +7,6 @@
   </longdescription>
   <upstream>
     <remote-id type="pypi">metakernel_bash</remote-id>
+    <remote-id type="github">Calysto/metakernel</remote-id>
   </upstream>
 </pkgmetadata>

diff --git a/dev-python/metakernel_python/metadata.xml b/dev-python/metakernel_python/metadata.xml
index 8bebad5..2b5e17e 100644
--- a/dev-python/metakernel_python/metadata.xml
+++ b/dev-python/metakernel_python/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci</herd>
@@ -7,5 +7,6 @@
   </longdescription>
   <upstream>
     <remote-id type="pypi">metakernel_python</remote-id>
+    <remote-id type="github">Calysto/metakernel</remote-id>
   </upstream>
 </pkgmetadata>

diff --git a/dev-python/pythonqt/metadata.xml b/dev-python/pythonqt/metadata.xml
index 897aa2e..84f9d45 100644
--- a/dev-python/pythonqt/metadata.xml
+++ b/dev-python/pythonqt/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci</herd>
+  <upstream>
+    <remote-id type="sourceforge">pythonqt</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/dev-python/ufl/metadata.xml b/dev-python/ufl/metadata.xml
index ddf216c..523b25e 100644
--- a/dev-python/ufl/metadata.xml
+++ b/dev-python/ufl/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
 	<herd>sci</herd>
@@ -14,5 +14,6 @@
 	</use>
 	<upstream>
 		<remote-id type="bitbucket">fenics-project/ufl</remote-id>
+		<remote-id type="launchpad">ufl</remote-id>
 	</upstream>
 </pkgmetadata>

diff --git a/dev-tcltk/img_rotate/metadata.xml b/dev-tcltk/img_rotate/metadata.xml
index d369d06..26d5c11 100644
--- a/dev-tcltk/img_rotate/metadata.xml
+++ b/dev-tcltk/img_rotate/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
 	<herd>sci</herd>
+	<upstream>
+		<remote-id type="sourceforge">cardtable</remote-id>
+	</upstream>
 </pkgmetadata>

diff --git a/media-gfx/brlcad/metadata.xml b/media-gfx/brlcad/metadata.xml
index f44bc80..55327bf 100644
--- a/media-gfx/brlcad/metadata.xml
+++ b/media-gfx/brlcad/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci</herd>
@@ -25,10 +25,13 @@
   geometric editing, and also an implementation of Weiler's n-Manifold
   Geometry (NMG) data structures for surface-based solid models and
   photon mapping.
-</longdescription>
+  </longdescription>
   <use>
     <flag name="benchmarks">
     Run benchmarks during test phase (need test option enabled)
-  </flag>
+    </flag>
   </use>
+  <upstream>
+    <remote-id type="sourceforge">brlcad</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/BBmap/metadata.xml b/sci-biology/BBmap/metadata.xml
index 2bc8930..5a16160 100644
--- a/sci-biology/BBmap/metadata.xml
+++ b/sci-biology/BBmap/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -6,4 +6,7 @@
     <email>mmokrejs@×××××××××××××××.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">bbmap</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/BamView/metadata.xml b/sci-biology/BamView/metadata.xml
index 462eb58..b78a987 100644
--- a/sci-biology/BamView/metadata.xml
+++ b/sci-biology/BamView/metadata.xml
@@ -1,8 +1,11 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
   <maintainer>
     <email>mmokrejs@×××××××××××××××.cz</email>
   </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">bamview</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/CONTIGuator/metadata.xml b/sci-biology/CONTIGuator/metadata.xml
index 2bc8930..3dd7dfd 100644
--- a/sci-biology/CONTIGuator/metadata.xml
+++ b/sci-biology/CONTIGuator/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -6,4 +6,7 @@
     <email>mmokrejs@×××××××××××××××.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">contiguator</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/EBARDenovo/metadata.xml b/sci-biology/EBARDenovo/metadata.xml
index 2bc8930..0e1efe2 100644
--- a/sci-biology/EBARDenovo/metadata.xml
+++ b/sci-biology/EBARDenovo/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -6,4 +6,7 @@
     <email>mmokrejs@×××××××××××××××.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">ebardenovo</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/FLASH/metadata.xml b/sci-biology/FLASH/metadata.xml
index 2bc8930..cc10e6d 100644
--- a/sci-biology/FLASH/metadata.xml
+++ b/sci-biology/FLASH/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -6,4 +6,7 @@
     <email>mmokrejs@×××××××××××××××.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">flashpage</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/MeV/metadata.xml b/sci-biology/MeV/metadata.xml
index 91ee05e..ed5534d 100644
--- a/sci-biology/MeV/metadata.xml
+++ b/sci-biology/MeV/metadata.xml
@@ -1,8 +1,11 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-<herd>sci-biology</herd>
-<maintainer>
-  <email>mmokrejs@×××××××××××××××.cz</email>
-</maintainer>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@×××××××××××××××.cz</email>
+  </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">mev-tm4</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/RSeQC/metadata.xml b/sci-biology/RSeQC/metadata.xml
index 2bc8930..1690d45 100644
--- a/sci-biology/RSeQC/metadata.xml
+++ b/sci-biology/RSeQC/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -6,4 +6,7 @@
     <email>mmokrejs@×××××××××××××××.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">rseqc</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/Ray/metadata.xml b/sci-biology/Ray/metadata.xml
index 07b5255..583ccc0 100644
--- a/sci-biology/Ray/metadata.xml
+++ b/sci-biology/Ray/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
 	<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
 		<email>mmokrejs@×××××××××××××××.cz</email>
 		<name>Martin Mokrejs</name>
 	</maintainer>
+	<upstream>
+		<remote-id type="sourceforge">denovoassembler</remote-id>
+	</upstream>
 </pkgmetadata>

diff --git a/sci-biology/SolexaQA/metadata.xml b/sci-biology/SolexaQA/metadata.xml
index 2bc8930..c7c89f9 100644
--- a/sci-biology/SolexaQA/metadata.xml
+++ b/sci-biology/SolexaQA/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -6,4 +6,7 @@
     <email>mmokrejs@×××××××××××××××.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">clview</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/TransDecoder/metadata.xml b/sci-biology/TransDecoder/metadata.xml
index 33de46b..00208df 100644
--- a/sci-biology/TransDecoder/metadata.xml
+++ b/sci-biology/TransDecoder/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -8,5 +8,6 @@
   </maintainer>
   <upstream>
     <remote-id type="github">TransDecoder/TransDecoder</remote-id>
+    <remote-id type="sourceforge">transdecoder</remote-id>
   </upstream>
 </pkgmetadata>

diff --git a/sci-biology/VarScan/metadata.xml b/sci-biology/VarScan/metadata.xml
index 897aa2e..d49d2ba 100644
--- a/sci-biology/VarScan/metadata.xml
+++ b/sci-biology/VarScan/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci</herd>
+  <upstream>
+    <remote-id type="sourceforge">varscan</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/abacas/metadata.xml b/sci-biology/abacas/metadata.xml
index 2bc8930..8f79243 100644
--- a/sci-biology/abacas/metadata.xml
+++ b/sci-biology/abacas/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -6,4 +6,7 @@
     <email>mmokrejs@×××××××××××××××.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">abacas</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/amos/metadata.xml b/sci-biology/amos/metadata.xml
index 973202f..42cab91 100644
--- a/sci-biology/amos/metadata.xml
+++ b/sci-biology/amos/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -11,5 +11,8 @@ AMOS is collection of tools and class interfaces for the assembly of DNA
 sequencing reads. The package includes a robust infrastructure, modular assembly
 pipelines, and tools for overlapping, consensus generation, contigging, and 
 assembly manipulation
-</longdescription>
+  </longdescription>
+  <upstream>
+    <remote-id type="sourceforge">amos</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/bambus/metadata.xml b/sci-biology/bambus/metadata.xml
index 8d87f01..627fd14 100644
--- a/sci-biology/bambus/metadata.xml
+++ b/sci-biology/bambus/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
 	<herd>sci-biology</herd>
@@ -7,4 +7,7 @@
 		<name>Martin Mokrejs</name>
 	</maintainer>
 	<longdescription>Bambus is the first general purpose scaffolder that is publicly available as an open source package. While most other scaffolders are closely tied to a specific assembly program, Bambus accepts the output from most current assemblers and provides the user with great flexibility in choosing the scaffolding parameters. In particular, Bambus is able to accept contig linking data other than specified by mate-pairs. Such sources of information include alignment to a reference genome (Bambus can directly use the output of MUMmer), physical mapping data, or information about gene synteny.</longdescription>
+	<upstream>
+		<remote-id type="sourceforge">amos</remote-id>
+	</upstream>
 </pkgmetadata>

diff --git a/sci-biology/clview/metadata.xml b/sci-biology/clview/metadata.xml
index 07b5255..393a828 100644
--- a/sci-biology/clview/metadata.xml
+++ b/sci-biology/clview/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
 	<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
 		<email>mmokrejs@×××××××××××××××.cz</email>
 		<name>Martin Mokrejs</name>
 	</maintainer>
+	<upstream>
+		<remote-id type="sourceforge">clview</remote-id>
+	</upstream>
 </pkgmetadata>

diff --git a/sci-biology/cortex_var/metadata.xml b/sci-biology/cortex_var/metadata.xml
index 2bc8930..04da164 100644
--- a/sci-biology/cortex_var/metadata.xml
+++ b/sci-biology/cortex_var/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -6,4 +6,7 @@
     <email>mmokrejs@×××××××××××××××.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">cortexassembler</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/estscan/metadata.xml b/sci-biology/estscan/metadata.xml
index 14aff5c..15f280c 100644
--- a/sci-biology/estscan/metadata.xml
+++ b/sci-biology/estscan/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -12,4 +12,7 @@
   <use>
     <flag name="ifc">Undocumented USE</flag>
   </use>
+  <upstream>
+    <remote-id type="sourceforge">estscan</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/fsa/metadata.xml b/sci-biology/fsa/metadata.xml
index 2bc8930..b40b0c2 100644
--- a/sci-biology/fsa/metadata.xml
+++ b/sci-biology/fsa/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -6,4 +6,7 @@
     <email>mmokrejs@×××××××××××××××.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">fsa</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/gbrowse/metadata.xml b/sci-biology/gbrowse/metadata.xml
index 61916cb..268d5a0 100644
--- a/sci-biology/gbrowse/metadata.xml
+++ b/sci-biology/gbrowse/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <maintainer>
@@ -9,5 +9,8 @@
   <herd>sci-biology</herd>
   <longdescription lang="en">
 		GBrowse is a generic genome browser written in perl, could run as CGI, under mod_perl. Something called Apache::Registry should make it faster. It uses mysql or postgres as the storage engine.
-    </longdescription>
+  </longdescription>
+  <upstream>
+    <remote-id type="sourceforge">gmod</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/genomeview-bin/metadata.xml b/sci-biology/genomeview-bin/metadata.xml
index 07b5255..5562159 100644
--- a/sci-biology/genomeview-bin/metadata.xml
+++ b/sci-biology/genomeview-bin/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
 	<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
 		<email>mmokrejs@×××××××××××××××.cz</email>
 		<name>Martin Mokrejs</name>
 	</maintainer>
+	<upstream>
+		<remote-id type="sourceforge">genomeview</remote-id>
+	</upstream>
 </pkgmetadata>

diff --git a/sci-biology/glean/metadata.xml b/sci-biology/glean/metadata.xml
index 2bc8930..46b93e2 100644
--- a/sci-biology/glean/metadata.xml
+++ b/sci-biology/glean/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -6,4 +6,7 @@
     <email>mmokrejs@×××××××××××××××.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">glean-gene</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/inGAP-bin/metadata.xml b/sci-biology/inGAP-bin/metadata.xml
index 2bc8930..8ed5082 100644
--- a/sci-biology/inGAP-bin/metadata.xml
+++ b/sci-biology/inGAP-bin/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -6,4 +6,7 @@
     <email>mmokrejs@×××××××××××××××.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">ingap</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/jtreeview/metadata.xml b/sci-biology/jtreeview/metadata.xml
index 2bc8930..68e07bd 100644
--- a/sci-biology/jtreeview/metadata.xml
+++ b/sci-biology/jtreeview/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -6,4 +6,7 @@
     <email>mmokrejs@×××××××××××××××.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">jtreeview</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/lucy/metadata.xml b/sci-biology/lucy/metadata.xml
index 07b5255..a69c00c 100644
--- a/sci-biology/lucy/metadata.xml
+++ b/sci-biology/lucy/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
 	<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
 		<email>mmokrejs@×××××××××××××××.cz</email>
 		<name>Martin Mokrejs</name>
 	</maintainer>
+	<upstream>
+		<remote-id type="sourceforge">lucy</remote-id>
+	</upstream>
 </pkgmetadata>

diff --git a/sci-biology/manatee-igs/metadata.xml b/sci-biology/manatee-igs/metadata.xml
index 2bc8930..695de04 100644
--- a/sci-biology/manatee-igs/metadata.xml
+++ b/sci-biology/manatee-igs/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -6,4 +6,7 @@
     <email>mmokrejs@×××××××××××××××.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">manatee</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/manatee-jcvi/metadata.xml b/sci-biology/manatee-jcvi/metadata.xml
index 2bc8930..695de04 100644
--- a/sci-biology/manatee-jcvi/metadata.xml
+++ b/sci-biology/manatee-jcvi/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -6,4 +6,7 @@
     <email>mmokrejs@×××××××××××××××.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">manatee</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/parafly/metadata.xml b/sci-biology/parafly/metadata.xml
index 2bc8930..d9410a9 100644
--- a/sci-biology/parafly/metadata.xml
+++ b/sci-biology/parafly/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -6,4 +6,7 @@
     <email>mmokrejs@×××××××××××××××.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">transdecoder</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/samstat/metadata.xml b/sci-biology/samstat/metadata.xml
index 2bc8930..2a4a345 100644
--- a/sci-biology/samstat/metadata.xml
+++ b/sci-biology/samstat/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -6,4 +6,7 @@
     <email>mmokrejs@×××××××××××××××.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">samstat</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/scaffold_builder/metadata.xml b/sci-biology/scaffold_builder/metadata.xml
index 2bc8930..01809e9 100644
--- a/sci-biology/scaffold_builder/metadata.xml
+++ b/sci-biology/scaffold_builder/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -6,4 +6,7 @@
     <email>mmokrejs@×××××××××××××××.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">scaffold-b</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/skewer-bin/metadata.xml b/sci-biology/skewer-bin/metadata.xml
index 2bc8930..0c9722d 100644
--- a/sci-biology/skewer-bin/metadata.xml
+++ b/sci-biology/skewer-bin/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -6,4 +6,7 @@
     <email>mmokrejs@×××××××××××××××.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">skewer</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/staden/metadata.xml b/sci-biology/staden/metadata.xml
index 2bc8930..bbb42e1 100644
--- a/sci-biology/staden/metadata.xml
+++ b/sci-biology/staden/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -6,4 +6,7 @@
     <email>mmokrejs@×××××××××××××××.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">staden</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/swissknife/metadata.xml b/sci-biology/swissknife/metadata.xml
index f17a827..70d333f 100644
--- a/sci-biology/swissknife/metadata.xml
+++ b/sci-biology/swissknife/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
+  <upstream>
+    <remote-id type="sourceforge">swissknife</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/tgicl/metadata.xml b/sci-biology/tgicl/metadata.xml
index 2bc8930..3a53e90 100644
--- a/sci-biology/tgicl/metadata.xml
+++ b/sci-biology/tgicl/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -6,4 +6,7 @@
     <email>mmokrejs@×××××××××××××××.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">tgicl</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/trowel/metadata.xml b/sci-biology/trowel/metadata.xml
index 2bc8930..48ef8ee 100644
--- a/sci-biology/trowel/metadata.xml
+++ b/sci-biology/trowel/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
@@ -6,4 +6,7 @@
     <email>mmokrejs@×××××××××××××××.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">trowel-ec</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-biology/wgs-assembler/metadata.xml b/sci-biology/wgs-assembler/metadata.xml
index f17a827..8cc5aa2 100644
--- a/sci-biology/wgs-assembler/metadata.xml
+++ b/sci-biology/wgs-assembler/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-biology</herd>
+  <upstream>
+    <remote-id type="sourceforge">wgs-assembler</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-chemistry/NMRdyn/metadata.xml b/sci-chemistry/NMRdyn/metadata.xml
index c166166..7604354 100644
--- a/sci-chemistry/NMRdyn/metadata.xml
+++ b/sci-chemistry/NMRdyn/metadata.xml
@@ -1,8 +1,11 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
 	<maintainer>
 		<email>jlec@g.o</email>
 		<name>Justin Lecher</name>
 	</maintainer>
+	<upstream>
+		<remote-id type="sourceforge">nmrdyn</remote-id>
+	</upstream>
 </pkgmetadata>

diff --git a/sci-chemistry/openbabel-java/metadata.xml b/sci-chemistry/openbabel-java/metadata.xml
index 13ecd9d..9de1810 100644
--- a/sci-chemistry/openbabel-java/metadata.xml
+++ b/sci-chemistry/openbabel-java/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-chemistry</herd>
@@ -9,4 +9,7 @@
     solid-state materials, biochemistry, or related areas. This package enables
     to access Open Babel library from Java (Scala, etc.) programs.
   </longdescription>
+  <upstream>
+    <remote-id type="sourceforge">openbabel</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-chemistry/openbabel-perl/metadata.xml b/sci-chemistry/openbabel-perl/metadata.xml
index 0750562..c73e211 100644
--- a/sci-chemistry/openbabel-perl/metadata.xml
+++ b/sci-chemistry/openbabel-perl/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-chemistry</herd>
@@ -9,4 +9,7 @@
     solid-state materials, biochemistry, or related areas.
     This package enables to access Open Babel library from Perl programs.
   </longdescription>
+  <upstream>
+    <remote-id type="sourceforge">openbabel</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-chemistry/openbabel-python/metadata.xml b/sci-chemistry/openbabel-python/metadata.xml
index f857801..66b2cb7 100644
--- a/sci-chemistry/openbabel-python/metadata.xml
+++ b/sci-chemistry/openbabel-python/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-chemistry</herd>
@@ -9,4 +9,7 @@
     solid-state materials, biochemistry, or related areas. This package enables
     to access Open Babel library from Python programs.
   </longdescription>
+  <upstream>
+    <remote-id type="sourceforge">openbabel</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-chemistry/openbabel-ruby/metadata.xml b/sci-chemistry/openbabel-ruby/metadata.xml
index e787ba0..2e486b2 100644
--- a/sci-chemistry/openbabel-ruby/metadata.xml
+++ b/sci-chemistry/openbabel-ruby/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-chemistry</herd>
@@ -9,4 +9,7 @@
     solid-state materials, biochemistry, or related areas. This package enables
     to access Open Babel library from Ruby programs.
   </longdescription>
+  <upstream>
+    <remote-id type="sourceforge">openbabel</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-chemistry/openbabel/metadata.xml b/sci-chemistry/openbabel/metadata.xml
index e366d5f..0e989df 100644
--- a/sci-chemistry/openbabel/metadata.xml
+++ b/sci-chemistry/openbabel/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-chemistry</herd>
@@ -17,4 +17,7 @@
     <flag name="ruby">Install Ruby bindings.</flag>
     <flag name="wxwidgets">Build Open Babel GUI.</flag>
   </use>
+  <upstream>
+    <remote-id type="sourceforge">openbabel</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-chemistry/pesto/metadata.xml b/sci-chemistry/pesto/metadata.xml
index 51fdeda..03b4d59 100644
--- a/sci-chemistry/pesto/metadata.xml
+++ b/sci-chemistry/pesto/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-chemistry</herd>
+  <upstream>
+    <remote-id type="sourceforge">pesto</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-chemistry/pymol-apbs-plugin/metadata.xml b/sci-chemistry/pymol-apbs-plugin/metadata.xml
index 9ac9ffd..3632cfa 100644
--- a/sci-chemistry/pymol-apbs-plugin/metadata.xml
+++ b/sci-chemistry/pymol-apbs-plugin/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-<herd>sci-chemistry</herd>
+	<herd>sci-chemistry</herd>
+	<upstream>
+		<remote-id type="sourceforge">pymolapbsplugin</remote-id>
+	</upstream>
 </pkgmetadata>

diff --git a/sci-chemistry/rosetta-tools/metadata.xml b/sci-chemistry/rosetta-tools/metadata.xml
index 51fdeda..7cdf9db 100644
--- a/sci-chemistry/rosetta-tools/metadata.xml
+++ b/sci-chemistry/rosetta-tools/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-chemistry</herd>
+  <upstream>
+    <remote-id type="sourceforge">dylans-biotools</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-libs/ghmm/metadata.xml b/sci-libs/ghmm/metadata.xml
index 970013a..be6f825 100644
--- a/sci-libs/ghmm/metadata.xml
+++ b/sci-libs/ghmm/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <maintainer>
@@ -6,4 +6,7 @@
     <name>Andrey Kislyuk</name>
   </maintainer>
   <herd>sci</herd>
+  <upstream>
+    <remote-id type="sourceforge">ghmm</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-libs/libcgnsoo/metadata.xml b/sci-libs/libcgnsoo/metadata.xml
index b229aec..9fd767e 100644
--- a/sci-libs/libcgnsoo/metadata.xml
+++ b/sci-libs/libcgnsoo/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-<herd>sci</herd>
+	<herd>sci</herd>
+	<upstream>
+		<remote-id type="sourceforge">openfoam-extend</remote-id>
+	</upstream>
 </pkgmetadata>

diff --git a/sci-libs/nipype/metadata.xml b/sci-libs/nipype/metadata.xml
index 1f3c091..14eea39 100644
--- a/sci-libs/nipype/metadata.xml
+++ b/sci-libs/nipype/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci</herd>
@@ -17,5 +17,8 @@
 	the learning curve necessary to use different packages. Nipype is
 	creating a collaborative platform for neuroimaging software development
 	in a high-level language and addressing limitations of existing pipeline systems.
-</longdescription>
+  </longdescription>
+  <upstream>
+    <remote-id type="sourceforge">nipy</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-libs/pydicom/metadata.xml b/sci-libs/pydicom/metadata.xml
index 897aa2e..00acf16 100644
--- a/sci-libs/pydicom/metadata.xml
+++ b/sci-libs/pydicom/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci</herd>
+  <upstream>
+    <remote-id type="pypi">pydicom</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-libs/spglib/metadata.xml b/sci-libs/spglib/metadata.xml
index fe098fe..f2e82ed 100644
--- a/sci-libs/spglib/metadata.xml
+++ b/sci-libs/spglib/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
 	<maintainer>
@@ -9,4 +9,7 @@
 	<longdescription lang="en">
 		Spglib is a C library for finding and handling crystal symmetries.
 	</longdescription>
+	<upstream>
+		<remote-id type="sourceforge">spglib</remote-id>
+	</upstream>
 </pkgmetadata>

diff --git a/sci-libs/starparse/metadata.xml b/sci-libs/starparse/metadata.xml
index 897aa2e..728ed77 100644
--- a/sci-libs/starparse/metadata.xml
+++ b/sci-libs/starparse/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci</herd>
+  <upstream>
+    <remote-id type="sourceforge">burrow-owl</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-libs/vxl/metadata.xml b/sci-libs/vxl/metadata.xml
index 1cdbde2..5fdfc5e 100644
--- a/sci-libs/vxl/metadata.xml
+++ b/sci-libs/vxl/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci</herd>
@@ -7,5 +7,8 @@
   for computer vision research and implementation. It was created from TargetJr
   and the IUE with the aim of making a light, fast and consistent system. VXL is
   written in ANSI/ISO C++ and is designed to be portable over many platforms.
-</longdescription>
+  </longdescription>
+  <upstream>
+    <remote-id type="sourceforge">vxl</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-mathematics/mdp/metadata.xml b/sci-mathematics/mdp/metadata.xml
index 6e39428..e9aaf6b 100644
--- a/sci-mathematics/mdp/metadata.xml
+++ b/sci-mathematics/mdp/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-mathematics</herd>
@@ -12,6 +12,9 @@
 	(PCA), Independent Component Analysis (ICA), Slow Feature Analysis (SFA),
 	Independent Slow Feature Analysis (ISFA), Growing Neural Gas (GNG), Factor
 	Analysis, Fisher Discriminant Analysis (FDA), Gaussian Classifiers, and
-	Restricted Boltzmann Machines. 
-</longdescription>
+	Restricted Boltzmann Machines.
+  </longdescription>
+  <upstream>
+    <remote-id type="sourceforge">mdp-toolkit</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-mathematics/ufc/metadata.xml b/sci-mathematics/ufc/metadata.xml
index 497df08..5a23419 100644
--- a/sci-mathematics/ufc/metadata.xml
+++ b/sci-mathematics/ufc/metadata.xml
@@ -1,11 +1,12 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>sci-mathematics</herd>
   <longdescription lang="en">
 UFC (Unified Form-assembly Code) is a unified framework for finite element assembly. More precisely, it defines a fixed interface for communicating low level routines (functions) for evaluating and assembling finite element variational forms. The UFC interface consists of a single header file ufc.h that specifies a C++ interface that must be implemented by code that complies with the UFC specification.
-</longdescription>
+  </longdescription>
   <upstream>
     <remote-id type="bitbucket">fenics-project/ufc-deprecated</remote-id>
+    <remote-id type="launchpad">ufc</remote-id>
   </upstream>
 </pkgmetadata>

diff --git a/sci-misc/kaldi/metadata.xml b/sci-misc/kaldi/metadata.xml
index 9e25ae0..e961e51 100644
--- a/sci-misc/kaldi/metadata.xml
+++ b/sci-misc/kaldi/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <maintainer>
@@ -9,4 +9,7 @@
     in C++ and licensed under the Apache License v2.0.
     Kaldi is intended for use by speech recognition researchers.
   </longdescription>
+  <upstream>
+    <remote-id type="sourceforge">kaldi</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-misc/praat/metadata.xml b/sci-misc/praat/metadata.xml
index 7bd7ae0..eba3609 100644
--- a/sci-misc/praat/metadata.xml
+++ b/sci-misc/praat/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <maintainer>
@@ -7,5 +7,8 @@
   <longdescription lang="en">
 	Praat is a phonetic program for computer. It includes speech synthesis,
 	analysis and other tools.
-</longdescription>
+  </longdescription>
+  <upstream>
+    <remote-id type="github">praat/praat</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-physics/genfit/metadata.xml b/sci-physics/genfit/metadata.xml
index 5fae1b6..5534919 100644
--- a/sci-physics/genfit/metadata.xml
+++ b/sci-physics/genfit/metadata.xml
@@ -1,8 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-<herd>sci-physics</herd>
-<longdescription lang="en">
+  <herd>sci-physics</herd>
+  <longdescription lang="en">
   GENFIT is an experiment-independent framework for track reconstruction for
   particle and nuclear physics. It consists of three modular components:
   - Track fitting algorithms
@@ -26,6 +26,9 @@
   detector hits in a transparent way without any geometrical simplifications.
   GENFIT has been developed in the framework of the PANDA experiment at
   FAIR, Darmstadt, Germany. 
-  It is also used in the Belle-2, Fopi, and GEM-TPC experiments. 
-</longdescription>
+  It is also used in the Belle-2, Fopi, and GEM-TPC experiments.
+  </longdescription>
+  <upstream>
+    <remote-id type="sourceforge">genfit</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sci-visualization/nodemon/metadata.xml b/sci-visualization/nodemon/metadata.xml
index 317855c..9647ad4 100644
--- a/sci-visualization/nodemon/metadata.xml
+++ b/sci-visualization/nodemon/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
 	<herd>sci</herd>
@@ -10,8 +10,11 @@
 NodeMon is a distributed visualization tool for monitoring system resource
 utilization.  It is primarily intended for clusters and large-scale NUMA
 systems.
-</longdescription>
+	</longdescription>
 	<use>
 		<flag name="pbs">Enable support for the Portable Batch System.</flag>
 	</use>
+	<upstream>
+		<remote-id type="sourceforge">nodemon</remote-id>
+	</upstream>
 </pkgmetadata>

diff --git a/sci-visualization/vtkPOFFReader/metadata.xml b/sci-visualization/vtkPOFFReader/metadata.xml
index 334411a..a0fda9b 100644
--- a/sci-visualization/vtkPOFFReader/metadata.xml
+++ b/sci-visualization/vtkPOFFReader/metadata.xml
@@ -1,7 +1,10 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
 	<herd>sci</herd>
 	<use>
 	</use>
+	<upstream>
+		<remote-id type="sourceforge">of-interfaces</remote-id>
+	</upstream>
 </pkgmetadata>

diff --git a/sys-cluster/modules/metadata.xml b/sys-cluster/modules/metadata.xml
index 2ccddf5..4405dc3 100644
--- a/sys-cluster/modules/metadata.xml
+++ b/sys-cluster/modules/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>cluster</herd>
@@ -12,5 +12,8 @@
   typically instruct the module command to alter or set shell
   environment variables such as PATH, MANPATH, etc. as well as define
   aliases over a variety of shells.
-</longdescription>
+  </longdescription>
+  <upstream>
+    <remote-id type="sourceforge">modules</remote-id>
+  </upstream>
 </pkgmetadata>

diff --git a/sys-cluster/pyslice/metadata.xml b/sys-cluster/pyslice/metadata.xml
index d2d79a4..042d5e8 100644
--- a/sys-cluster/pyslice/metadata.xml
+++ b/sys-cluster/pyslice/metadata.xml
@@ -1,11 +1,12 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <herd>cluster</herd>
   <longdescription>
 Templating system for parametric modeling.
-</longdescription>
+  </longdescription>
   <upstream>
     <remote-id type="pypi">pyslice</remote-id>
+    <remote-id type="sourceforge">pyslice</remote-id>
   </upstream>
 </pkgmetadata>