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commit: a41c01197596738c1f3af00bda7e3cbf52bc9f1c |
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Author: David Seifert <soap <AT> gentoo <DOT> org> |
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AuthorDate: Mon Jan 1 12:42:45 2018 +0000 |
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Commit: David Seifert <soap <AT> gentoo <DOT> org> |
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CommitDate: Mon Jan 1 12:42:45 2018 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a41c0119 |
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|
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sci-biology/fasta: Remove old |
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|
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Package-Manager: Portage-2.3.19, Repoman-2.3.6 |
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|
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sci-biology/fasta/Manifest | 1 - |
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sci-biology/fasta/fasta-35.4.10.ebuild | 57 --------------------------- |
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sci-biology/fasta/files/35.4.10-ldflags.patch | 26 ------------ |
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3 files changed, 84 deletions(-) |
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|
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diff --git a/sci-biology/fasta/Manifest b/sci-biology/fasta/Manifest |
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index 847e1f925c0..800c5b2628b 100644 |
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--- a/sci-biology/fasta/Manifest |
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+++ b/sci-biology/fasta/Manifest |
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@@ -1,2 +1 @@ |
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-DIST fasta-35.4.10.tar.gz 618971 BLAKE2B cbc413c13f7d5151add9886eb0fbe1d55d9b1847f406ff8fe614e729c6c3ab155711b6c38a2085eabd3f27506562a98ca8d9f1409525f27fe091b30f3a1e840d SHA512 f04268f0eea59cd40985c86597ab68bef40ee28e6ca914a7182c0edfe943ec8fb2a860558f422f210a4c03f3c34f36c677bd3971bc240cb87695826c755f5a47 |
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DIST fasta-36.3.5e.tar.gz 943763 BLAKE2B 6234d0aee76af6614e6d25ebcfbdfae080db5bc5adf611aeb6edc53ed7c6cb6cef257bf852ed39bc286527cec4175c251765ce23ea5ff39d12ff8947dba97ac6 SHA512 ddfcae36dadd7e2ed5c8c8c0bda2eed077e9f6cd55e4ebf507690671af156358e9da4e7cb1406d2b8713c326c54a9d829fc25e668b16dfa6df48d18e3a009812 |
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|
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diff --git a/sci-biology/fasta/fasta-35.4.10.ebuild b/sci-biology/fasta/fasta-35.4.10.ebuild |
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deleted file mode 100644 |
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index 8cad4d2a8b0..00000000000 |
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--- a/sci-biology/fasta/fasta-35.4.10.ebuild |
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+++ /dev/null |
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@@ -1,57 +0,0 @@ |
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-# Copyright 1999-2015 Gentoo Foundation |
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-# Distributed under the terms of the GNU General Public License v2 |
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- |
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-EAPI="2" |
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- |
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-inherit eutils flag-o-matic toolchain-funcs |
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- |
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-DESCRIPTION="FASTA is a DNA and Protein sequence alignment software package" |
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-HOMEPAGE="http://fasta.bioch.virginia.edu/fasta_www2/fasta_down.shtml" |
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-SRC_URI="http://faculty.virginia.edu/wrpearson/${PN}/${PN}3/${P}.tar.gz" |
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- |
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-LICENSE="fasta" |
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-SLOT="0" |
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-KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" |
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-IUSE="debug cpu_flags_x86_sse2 test" |
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- |
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-DEPEND="test? ( app-shells/tcsh )" |
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-RDEPEND="" |
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- |
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-src_prepare() { |
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- CC_ALT= |
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- CFLAGS_ALT= |
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- ALT= |
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- |
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- use debug && append-flags -DDEBUG |
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- |
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- if [[ $(tc-getCC) == *icc* ]]; then |
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- CC_ALT=icc |
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- ALT="${ALT}_icc" |
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- else |
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- CC_ALT=$(tc-getCC) |
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- use x86 && ALT="32" |
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- use amd64 && ALT="64" |
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- fi |
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- |
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- if use cpu_flags_x86_sse2 ; then |
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- ALT="${ALT}_sse2" |
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- append-flags -msse2 |
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- [[ $(tc-getCC) == *icc* ]] || append-flags -ffast-math |
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- fi |
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- |
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- export CC_ALT="${CC_ALT}" |
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- export ALT="${ALT}" |
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- |
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- epatch "${FILESDIR}"/${PV}-ldflags.patch |
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-} |
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- |
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-src_compile() { |
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- cd src |
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- emake -f ../make/Makefile.linux${ALT} CC="${CC_ALT} ${CFLAGS}" HFLAGS="${LDFLAGS} -o" all || die |
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-} |
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- |
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-src_install() { |
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- dobin bin/* || die |
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- doman doc/{prss3.1,fasta35.1,pvcomp.1,fasts3.1,fastf3.1,ps_lav.1,map_db.1} || die |
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- dodoc FASTA_LIST README doc/{README.versions,readme*,fasta*,changes*} || die |
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-} |
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|
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diff --git a/sci-biology/fasta/files/35.4.10-ldflags.patch b/sci-biology/fasta/files/35.4.10-ldflags.patch |
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deleted file mode 100644 |
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index c3b7a9b5690..00000000000 |
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--- a/sci-biology/fasta/files/35.4.10-ldflags.patch |
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+++ /dev/null |
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@@ -1,26 +0,0 @@ |
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-diff --git a/make/Makefile.pcom b/make/Makefile.pcom |
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-index a808667..405be95 100644 |
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---- a/make/Makefile.pcom |
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-+++ b/make/Makefile.pcom |
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-@@ -274,16 +274,16 @@ print_pssm : print_pssm.c getseq.c karlin.c apam.c |
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- $(CC) -o print_pssm $(CFLAGS) print_pssm.c getseq.c karlin.c apam.c $(LIB_M) |
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- |
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- map_db : map_db.c uascii.h ncbl2_head.h |
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-- $(CC) $(CFLAGS) -o $(BIN)/map_db map_db.c |
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-+ $(CC) $(CFLAGS) $(HFLAGS) $(BIN)/map_db map_db.c |
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- |
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- list_db : list_db.c |
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-- $(CC) $(CFLAGS) -o $(BIN)/list_db list_db.c |
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-+ $(CC) $(CFLAGS) $(HFLAGS) $(BIN)/list_db list_db.c |
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- |
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- lav2ps : lav2plt.o lavplt_ps.o |
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-- $(CC) -DUNIX -o $(BIN)/lav2ps lav2plt.o lavplt_ps.o -lm |
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-+ $(CC) -DUNIX $(HFLAGS) $(BIN)/lav2ps lav2plt.o lavplt_ps.o -lm |
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- |
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- lav2svg : lav2plt.o lavplt_svg.o |
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-- $(CC) -DUNIX -o $(BIN)/lav2svg lav2plt.o lavplt_svg.o -lm |
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-+ $(CC) -DUNIX $(HFLAGS) $(BIN)/lav2svg lav2plt.o lavplt_svg.o -lm |
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- |
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- res_stats : res_stats.o scale_se.o |
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-- $(CC) -DUNIX -o $(BIN)/res_stats res_stats.o scale_se.o -lm |
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-+ $(CC) -DUNIX $(HFLAGS) $(BIN)/res_stats res_stats.o scale_se.o -lm |
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