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commit: bec2b834dd663f30d9bc508ee6043959b50fccfb |
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Author: Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq <DOT> in> |
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AuthorDate: Wed Jun 22 19:31:16 2022 +0000 |
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Commit: Anna Vyalkova <cyber+gentoo <AT> sysrq <DOT> in> |
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CommitDate: Sat Jun 25 17:42:15 2022 +0000 |
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URL: https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=bec2b834 |
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|
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sci-biology/cmdock: boinc fix |
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|
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See https://www.sidock.si/sidock/forum_thread.php?id=125&postid=1427 |
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|
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Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq.in> |
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|
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...dock-0.1.4-r1.ebuild => cmdock-0.1.4-r2.ebuild} | 28 +++++++++++++++------- |
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1 file changed, 20 insertions(+), 8 deletions(-) |
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|
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diff --git a/sci-biology/cmdock/cmdock-0.1.4-r1.ebuild b/sci-biology/cmdock/cmdock-0.1.4-r2.ebuild |
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similarity index 74% |
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rename from sci-biology/cmdock/cmdock-0.1.4-r1.ebuild |
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rename to sci-biology/cmdock/cmdock-0.1.4-r2.ebuild |
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index cf79531ec..422d56da2 100644 |
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--- a/sci-biology/cmdock/cmdock-0.1.4-r1.ebuild |
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+++ b/sci-biology/cmdock/cmdock-0.1.4-r2.ebuild |
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@@ -3,7 +3,7 @@ |
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|
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EAPI=8 |
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|
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-PYTHON_COMPAT=( python3_{8..11} pypy3 ) |
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+PYTHON_COMPAT=( python3_{8..11} ) |
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|
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BOINC_APP_OPTIONAL="true" |
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|
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@@ -11,27 +11,32 @@ DOCS_BUILDER="sphinx" |
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DOCS_AUTODOC=0 |
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DOCS_DIR="docs" |
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|
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-inherit python-any-r1 boinc-app docs flag-o-matic meson |
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+inherit python-single-r1 boinc-app docs flag-o-matic meson optfeature |
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|
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DESCRIPTION="Program for docking ligands to proteins and nucleic acids" |
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HOMEPAGE="https://gitlab.com/Jukic/cmdock" |
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SRC_URI="https://gitlab.com/Jukic/${PN}/-/archive/v${PV}/${PN}-v${PV}.tar.gz" |
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S="${WORKDIR}/${PN}-v${PV}" |
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+INSTALL_PREFIX="${EPREFIX}/opt/${P}" |
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|
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LICENSE="LGPL-3 ZLIB" |
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SLOT="0/${PV}" |
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KEYWORDS="~amd64" |
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IUSE="apidoc boinc cpu_flags_x86_sse2" |
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+REQUIRED_USE="${PYTHON_REQUIRED_USE}" |
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|
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RDEPEND=" |
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- dev-lang/perl |
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+ ${PYTHON_DEPS} |
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+ dev-lang/perl:* |
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boinc? ( sci-misc/boinc-wrapper ) |
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" |
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-BDEPEND=" |
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+DEPEND=" |
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dev-cpp/eigen:3 |
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dev-cpp/indicators |
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>=dev-cpp/pcg-cpp-0.98.1_p20210406-r1 |
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dev-libs/cxxopts |
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+" |
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+BDEPEND=" |
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doc? ( app-doc/doxygen ) |
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" |
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|
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@@ -46,8 +51,12 @@ BOINC_APP_HELPTEXT=\ |
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is to attach it to SiDock@home BOINC project." |
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|
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foreach_wrapper_job() { |
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- sed -i "$1" \ |
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- -e "s:@PREFIX@:${EPREFIX}/opt/${P}:g" || die |
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+ sed -e "s:@PREFIX@:${INSTALL_PREFIX}:g" -i "${1}" || die |
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+} |
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+ |
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+src_prepare() { |
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+ default |
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+ python_fix_shebang "${S}"/bin |
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} |
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|
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src_configure() { |
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@@ -75,19 +84,22 @@ src_compile() { |
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|
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src_install() { |
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meson_src_install |
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+ python_optimize "${ED}"/opt/${P}/ |
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|
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if use boinc; then |
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doappinfo "${FILESDIR}"/app_info_${PV}.xml |
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dowrapper ${PN}-boinc-zcp |
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|
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# install a blank file |
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+ touch "${T}"/docking_out || die |
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insinto $(get_project_root) |
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- insopts --owner boinc --group boinc |
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- : newins - docking_out.sd |
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+ insopts -m 0644 --owner boinc --group boinc |
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+ doins "${T}"/docking_out |
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fi |
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} |
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|
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pkg_postinst() { |
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+ optfeature "sdtether.py and sdrmsd.py scripts" "dev-python/numpy sci-chemistry/openbabel[python]" |
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use boinc && boinc-app_pkg_postinst |
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} |
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