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jlec 10/09/27 15:09:53 |
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Added: 5.6.0084-allow-dynamic-linking.patch |
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Log: |
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Version Bump |
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(Portage version: 2.2_rc87/cvs/Linux x86_64) |
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Revision Changes Path |
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1.1 sci-chemistry/refmac/files/5.6.0084-allow-dynamic-linking.patch |
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/files/5.6.0084-allow-dynamic-linking.patch?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/files/5.6.0084-allow-dynamic-linking.patch?rev=1.1&content-type=text/plain |
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Index: 5.6.0084-allow-dynamic-linking.patch |
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=================================================================== |
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diff --git a/makefile_refmac.inc1 b/makefile_refmac.inc1 |
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index 5263df1..62ccd3b 100644 |
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--- a/makefile_refmac.inc1 |
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+++ b/makefile_refmac.inc1 |
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@@ -90,9 +90,7 @@ messy_pdb.o \ |
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bridge.o \ |
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i0.o \ |
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i1.o \ |
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-chbevl.o \ |
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-$(LLIBCIF) \ |
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-$(LLIBLAPACK) |
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+chbevl.o |
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|
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|
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SUBL = \ |
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@@ -126,9 +124,7 @@ cell_symm_subrs.o \ |
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iheap_sort.o \ |
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linalgebra.o \ |
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math_refmac.o \ |
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-subnumrec.o \ |
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-$(LLIBLAPACK) \ |
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-$(LLIBCCP) |
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+subnumrec.o |
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|
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#-------------------------------------------------------------------------------- |
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|
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@@ -154,32 +150,32 @@ twin77mod.o: twin77mod.f |
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$(FC) $(FFLAGS) -c twin77mod.f |
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|
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|
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-max_with_twins.o: restr_files.f90 max_with_twins.f |
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- $(FC) $(FFLAGS) -c restr_files.f90 max_with_twins.f |
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+max_with_twins.o: restr_files.o max_with_twins.f |
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+ $(FC) $(FFLAGS) -c max_with_twins.f |
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|
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-merohedr_twin.o: restr_files.f90 merohedr_twin.f |
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- $(FC) $(FFLAGS) -c restr_files.f90 merohedr_twin.f |
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+merohedr_twin.o: restr_files.o merohedr_twin.f |
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+ $(FC) $(FFLAGS) -c merohedr_twin.f |
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|
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-ls_scaling_twin_save.o: restr_files.f90 ls_scaling_twin_save.f |
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- $(FC) $(FFLAGS) -c restr_files.f90 ls_scaling_twin_save.f |
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+ls_scaling_twin_save.o: restr_files.o ls_scaling_twin_save.f |
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+ $(FC) $(FFLAGS) -c ls_scaling_twin_save.f |
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|
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-ml_params_refine.o: restr_files.f90 ml_params_refine.f |
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- $(FC) $(FFLAGS) -c restr_files.f90 ml_params_refine.f |
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+ml_params_refine.o: restr_files.o ml_params_refine.f |
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+ $(FC) $(FFLAGS) -c ml_params_refine.f |
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|
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optimise_solvent_all.o: optimise_solvent_all.f90 |
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$(FC) $(FFLAGS) -c optimise_solvent_all.f90 |
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|
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-ncs_rest.o: restr_files.f90 ncs_ncs_generate.f90 ncs_rest.f |
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- $(FC) $(FFLAGS) -c restr_files.f90 ncs_ncs_generate.f90 ncs_rest.f |
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+ncs_rest.o: restr_files.o ncs_ncs_generate.o ncs_rest.f |
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+ $(FC) $(FFLAGS) -c ncs_rest.f |
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|
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-ncs_ncs_generate.o: ncs_ncs_generate.f90 align_refmac.f90 |
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- $(FC) $(FFLAGS) -c ncs_ncs_generate.f90 align_refmac.f90 |
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+ncs_ncs_generate.o: ncs_ncs_generate.f90 align_refmac.o |
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+ $(FC) $(FFLAGS) -c ncs_ncs_generate.f90 |
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|
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-lsq_exp2.o: restr_files.f90 dist_routines.f90 ncs_simil.f90 ridge.f90 local_tls.f90 lsq_exp2.f |
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- $(FC) $(FFLAGS) -c restr_files.f90 dist_routines.f90 ncs_simil.f90 ridge.f90 local_tls.f90 lsq_exp2.f |
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+lsq_exp2.o: restr_files.o dist_routines.o ncs_simil.o ridge.o local_tls.o lsq_exp2.f |
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+ $(FC) $(FFLAGS) -c lsq_exp2.f |
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|
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-vdw_and_contacts.o: vdw_and_contacts.f local_tls.f90 ridge.f90 restr_files.f90 |
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- $(FC) $(FFLAGS) -c restr_files.f90 ridge.f90 local_tls.f90 vdw_and_contacts.f |
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+vdw_and_contacts.o: vdw_and_contacts.f local_tls.o ridge.o restr_files.o |
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+ $(FC) $(FFLAGS) -c vdw_and_contacts.f |
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|
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dist_routines.o: dist_routines.f90 |
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$(FC) $(FFLAGS) -c dist_routines.f90 |
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@@ -193,77 +189,77 @@ ridge.o: ridge.f90 |
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align_refmac.o: align_refmac.f90 |
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$(FC) $(FFLAGS) -c align_refmac.f90 |
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|
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-rigid_allocate.o: restr_files.f90 rigid_allocate.f |
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- $(FC) $(FFLAGS) -c restr_files.f90 rigid_allocate.f |
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+rigid_allocate.o: restr_files.o rigid_allocate.f |
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+ $(FC) $(FFLAGS) -c rigid_allocate.f |
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|
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-tls_allocate.o: restr_files.f90 tls_allocate.f |
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- $(FC) $(FFLAGS) -c restr_files.f90 tls_allocate.f |
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+tls_allocate.o: restr_files.o tls_allocate.f |
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+ $(FC) $(FFLAGS) -c tls_allocate.f |
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|
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-hkon_secder_tch.o: hkon_secder_tch.f local_tls.f90 ncs_simil.f90 optimise_solvent_all.f90 restr_files.f90 |
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- $(FC) $(FFLAGS) -c restr_files.f90 optimise_solvent_all.f90 ncs_simil.f90 local_tls.f90 hkon_secder_tch.f |
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+hkon_secder_tch.o: hkon_secder_tch.f local_tls.o ncs_simil.o optimise_solvent_all.o restr_files.o |
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+ $(FC) $(FFLAGS) -c hkon_secder_tch.f |
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|
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-oppro_allocate.o: oppro_allocate.f filter_params.f90 optimise_solvent_all.f90 restr_files.f90 |
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- $(FC) $(FFLAGS) -c restr_files.f90 optimise_solvent_all.f90 filter_params.f90 oppro_allocate.f |
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+oppro_allocate.o: oppro_allocate.f filter_params.o optimise_solvent_all.o restr_files.o |
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+ $(FC) $(FFLAGS) -c oppro_allocate.f |
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|
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-read_extra_restraints.o: restr_files.f90 read_extra_restraints.f |
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- $(FC) $(FFLAGS) -c restr_files.f90 read_extra_restraints.f |
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+read_extra_restraints.o: restr_files.o read_extra_restraints.f |
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+ $(FC) $(FFLAGS) -c read_extra_restraints.f |
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|
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coords.o: coords.f90 atomf77mod.f |
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$(FC) $(FFLAGS) -c atomf77mod.f coords.f90 |
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|
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-refpre_twin.o: refpre_twin.f coords.f90 automorphism.f90 restr_files.f90 |
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- $(FC) $(FFLAGS) -c restr_files.f90 coords.f90 automorphism.f90 refpre_twin.f |
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+refpre_twin.o: refpre_twin.f coords.o automorphism.o restr_files.o |
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+ $(FC) $(FFLAGS) -c refpre_twin.f |
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|
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-decide_twin_opers_0.o: restr_files.f90 decide_twin_opers_0.f |
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- $(FC) $(FFLAGS) -c restr_files.f90 decide_twin_opers_0.f |
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+decide_twin_opers_0.o: restr_files.o decide_twin_opers_0.f |
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+ $(FC) $(FFLAGS) -c decide_twin_opers_0.f |
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|
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automorphism.o: automorphism.f90 |
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$(FC) $(FFLAGS) -c automorphism.f90 |
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|
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-mtz_write_twin.o: mtz_write_twin.f filter_params.f90 restr_files.f90 |
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- $(FC) $(FFLAGS) -c restr_files.f90 filter_params.f90 mtz_write_twin.f |
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+mtz_write_twin.o: mtz_write_twin.f filter_params.o restr_files.o |
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+ $(FC) $(FFLAGS) -c mtz_write_twin.f |
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|
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filter_params.o: filter_params.f90 |
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$(FC) $(FFLAGS) -c filter_params.f90 |
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|
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-rcard_tor1.o: rcard_tor1.f filter_params.f90 local_tls.f90 ridge.f90 optimise_solvent_all.f90 restr_files.f90 |
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- $(FC) $(FFLAGS) -c restr_files.f90 optimise_solvent_all.f90 filter_params.f90 local_tls.f90 ridge.f90 rcard_tor1.f |
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+rcard_tor1.o: rcard_tor1.f filter_params.o local_tls.o ridge.o optimise_solvent_all.o restr_files.o |
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+ $(FC) $(FFLAGS) -c rcard_tor1.f |
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|
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-inout_routines.o: restr_files.f90 inout_routines.f |
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- $(FC) $(FFLAGS) -c restr_files.f90 inout_routines.f |
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+inout_routines.o: restr_files.o inout_routines.f |
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+ $(FC) $(FFLAGS) -c inout_routines.f |
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|
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-local_tls.o: local_tls.f90 linalgebra_f90.f90 |
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- $(FC) $(FFLAGS) -c linalgebra_f90.f90 local_tls.f90 |
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+local_tls.o: local_tls.f90 linalgebra_f90.o |
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+ $(FC) $(FFLAGS) -c local_tls.f90 |
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|
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linalgebra_f90.o: linalgebra_f90.f90 |
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$(FC) $(FFLAGS) -c linalgebra_f90.f90 |
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|
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-make_refmac_dummy.o: make_refmac_dummy.f optimise_solvent_all.f90 |
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- $(FC) $(FFLAGS) -c optimise_solvent_all.f90 make_refmac_dummy.f |
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+make_refmac_dummy.o: make_refmac_dummy.f optimise_solvent_all.o |
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+ $(FC) $(FFLAGS) -c make_refmac_dummy.f |
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|
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-ml_scaling_double.o: ml_scaling_double.f optimise_solvent_all.f90 |
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- $(FC) $(FFLAGS) -c optimise_solvent_all.f90 ml_scaling_double.f |
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+ml_scaling_double.o: ml_scaling_double.f optimise_solvent_all.o |
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+ $(FC) $(FFLAGS) -c ml_scaling_double.f |
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|
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-refall_twin.o: refall_twin.f optimise_solvent_all.f90 restr_files.f90 |
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- $(FC) $(FFLAGS) -c restr_files.f90 optimise_solvent_all.f90 refall_twin.f |
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+refall_twin.o: refall_twin.f optimise_solvent_all.o restr_files.o |
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+ $(FC) $(FFLAGS) -c refall_twin.f |
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|
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-rharvest.o: rharvest.f optimise_solvent_all.f90 |
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- $(FC) $(FFLAGS) -c optimise_solvent_all.f90 rharvest.f |
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+rharvest.o: rharvest.f optimise_solvent_all.o |
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+ $(FC) $(FFLAGS) -c rharvest.f |
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|
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-solvent_contr_mask.o: solvent_contr_mask.f optimise_solvent_all.f90 |
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- $(FC) $(FFLAGS) -c optimise_solvent_all.f90 solvent_contr_mask.f |
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+solvent_contr_mask.o: solvent_contr_mask.f optimise_solvent_all.o |
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+ $(FC) $(FFLAGS) -c solvent_contr_mask.f |
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|
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-subag_scale_hessian.o: subag_scale_hessian.f optimise_solvent_all.f90 restr_files.f90 |
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- $(FC) $(FFLAGS) -c restr_files.f90 optimise_solvent_all.f90 subag_scale_hessian.f |
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+subag_scale_hessian.o: subag_scale_hessian.f optimise_solvent_all.o restr_files.o |
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+ $(FC) $(FFLAGS) -c subag_scale_hessian.f |
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|
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-subcf_scale1.o: subcf_scale1.f optimise_solvent_all.f90 |
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- $(FC) $(FFLAGS) -c optimise_solvent_all.f90 subcf_scale1.f |
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+subcf_scale1.o: subcf_scale1.f optimise_solvent_all.o |
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+ $(FC) $(FFLAGS) -c subcf_scale1.f |
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|
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-bvalue_routines.o: bvalue_routines.f90 restr_files.f90 atomf77mod.f |
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- $(FC) $(FFLAGS) -c restr_files.f90 atomf77mod.f bvalue_routines.f90 |
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+bvalue_routines.o: bvalue_routines.f90 restr_files.o atomf77mod.f |
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+ $(FC) $(FFLAGS) -c bvalue_routines.f90 |
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|
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-refmac_xml.o: refmac_xml.f optimise_solvent_all.f90 restr_files.f90 bvalue_routines.f90 |
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- $(FC) $(FFLAGS) -c bvalue_routines.f90 restr_files.f90 optimise_solvent_all.f90 refmac_xml.f |
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+refmac_xml.o: refmac_xml.f optimise_solvent_all.o restr_files.o bvalue_routines.o |
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+ $(FC) $(FFLAGS) -c refmac_xml.f |
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|
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hkl_pack.o: hkl_pack.f90 |
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$(FC) $(FFLAGS) -c hkl_pack.f90 |
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@@ -272,30 +268,31 @@ subvag.o: subvag.f hkl_pack.f90 |
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$(FC) $(FFLAGS) -c hkl_pack.f90 subvag.f |
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|
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refmac: $(SUBR) |
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- $(FC) $(FFLAGS) -o refmac${VERSION} ${SUBR} $(LLIBOTHERS) $(LLIBCCP) |
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+ $(FC) $(FFLAGS) $(LDFLAGS) -o refmac${VERSION} ${SUBR} $(LLIBOTHERS) $(LLIBCCP) $(LLIBCIF) $(LLIBLAPACK) |
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|
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-mol2_file.o: mol2_file.f odb_files.f90 |
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- $(FC) $(FFLAGS) -c odb_files.f90 mol2_file.f |
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+mol2_file.o: mol2_file.f odb_files.o |
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+ $(FC) $(FFLAGS) -c mol2_file.f |
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|
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-odb_files.o: odb_files.f90 elements_module.f90 enerf77mod.f |
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- $(FC) $(FFLAGS) -c elements_module.f90 enerf77mod.f odb_files.f90 |
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+odb_files.o: odb_files.f90 elements_module.o enerf77mod.f |
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+ $(FC) $(FFLAGS) -c enerf77mod.f odb_files.f90 |
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|
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elements_module.o: elements_module.f90 |
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$(FC) $(FFLAGS) -c elements_module.f90 |
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|
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-make_lib2.o: make_lib2.f odb_files.f90 |
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- $(FC) $(FFLAGS) -c odb_files.f90 make_lib2.f |
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+make_lib2.o: make_lib2.f odb_files.o |
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+ $(FC) $(FFLAGS) -c make_lib2.f |
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|
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pdb2libcheck.o: pdb2libcheck.f90 |
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$(FC) $(FFLAGS) -c pdb2libcheck.f90 |
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|
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-libcheck.o: libcheck.f elements_module.f90 pdb2libcheck.f90 |
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- $(FC) $(FFLAGS) -c elements_module.f90 pdb2libcheck.f90 libcheck.f |
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+libcheck.o: libcheck.f elements_module.o pdb2libcheck.o |
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+ $(FC) $(FFLAGS) -c libcheck.f |
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|
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libcheck: $(SUBL) |
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- $(FC) $(FFLAGS) -o libcheck${VERSION} $(SUBL) |
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+ $(FC) $(FFLAGS) $(LDFLAGS) -o libcheck${VERSION} $(SUBL) $(LLIBCCP) $(LLIBCIF) $(LLIBLAPACK) |
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|
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clean: |
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/bin/rm *.o |
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|
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bridge.o: bridge.cpp llhood.h covmat.h Gauss.h tabfunc.h |
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+ $(CXX) $(CXXFLAGS) -c bridge.cpp |
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