[gentoo-commits] proj/sci:master commit in: sci-biology/Ray/

[Martin Mokrejs]

commit:     8fdfde872ca6dc317739c26a7a195b11a86283af
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 23 17:57:26 2014 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 23 17:57:26 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=8fdfde87

sci-biology/Ray: a new package, maybe needs decent inspection from cluster herd and also java

Package-Manager: portage-2.2.7

---
 sci-biology/Ray/ChangeLog        | 10 ++++++++++
 sci-biology/Ray/Ray-2.3.0.ebuild | 28 ++++++++++++++++++++++++++++
 sci-biology/Ray/metadata.xml     |  9 +++++++++
 3 files changed, 47 insertions(+)

diff --git a/sci-biology/Ray/ChangeLog b/sci-biology/Ray/ChangeLog
new file mode 100644
index 0000000..5341c31
--- /dev/null
+++ b/sci-biology/Ray/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/Ray
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*Ray-2.3.0 (23 Mar 2014)
+
+  23 Mar 2014; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> +Ray-2.3.0.ebuild,
+  +metadata.xml:
+  sci-biology/Ray: a new package, maybe needs decent inspection from cluster
+  herd and also java

diff --git a/sci-biology/Ray/Ray-2.3.0.ebuild b/sci-biology/Ray/Ray-2.3.0.ebuild
new file mode 100644
index 0000000..2a904be
--- /dev/null
+++ b/sci-biology/Ray/Ray-2.3.0.ebuild
@@ -0,0 +1,28 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Assembler for metagenomes, genomes and transcriptomes (untested) using parallel MPI"
+HOMEPAGE="http://denovoassembler.sourceforge.net/"
+SRC_URI="http://sourceforge.net/projects/denovoassembler/files/Ray-"${PV}".tar.bz2"
+
+LICENSE="LGPL-3 GPL-3" # both must be agreed
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND="virtual/mpi"
+RDEPEND="${DEPEND}
+	sys-cluster/osc-mpiexec"
+
+src_prepare(){
+	cp -p README.md README
+	cp -p README.md RayPlatform/README
+}
+
+src_install(){
+	dobin Ray
+	dolib libRayPlatform.a libRay.a
+}

diff --git a/sci-biology/Ray/metadata.xml b/sci-biology/Ray/metadata.xml
new file mode 100644
index 0000000..07b5255
--- /dev/null
+++ b/sci-biology/Ray/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci-biology</herd>
+	<maintainer>
+		<email>mmokrejs@×××××××××××××××.cz</email>
+		<name>Martin Mokrejs</name>
+	</maintainer>
+</pkgmetadata>