[gentoo-commits] proj/sci:master commit in: sci-libs/libmaus2/

[Martin Mokrejs]

commit:     ec639407519c52105c86906c2909ecbeb3a25665
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Jul 14 18:42:06 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Jul 14 18:42:06 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=ec639407

sci-libs/libmaus2: new package although a version bump of sci-libs/libmaus

I think this and the parental libmaus package will need a fix on the LICENSE
line (they are not only GPL-v3).

Package-Manager: portage-2.2.28

 sci-libs/libmaus2/libmaus2-9999.ebuild | 27 +++++++++++++++++++++++++++
 sci-libs/libmaus2/metadata.xml         | 20 ++++++++++++++++++++
 2 files changed, 47 insertions(+)

diff --git a/sci-libs/libmaus2/libmaus2-9999.ebuild b/sci-libs/libmaus2/libmaus2-9999.ebuild
new file mode 100644
index 0000000..ae02d15
--- /dev/null
+++ b/sci-libs/libmaus2/libmaus2-9999.ebuild
@@ -0,0 +1,27 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit autotools git-r3
+
+DESCRIPTION="Library for biobambam"
+HOMEPAGE="https://github.com/gt1/libmaus"
+EGIT_REPO_URI="https://github.com/gt1/libmaus2.git"
+
+LICENSE="GPL-3" # BUG: a mix of licenses, see AUTHORS
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="
+	!sci-libs/libmaus
+	sci-libs/io_lib
+	app-arch/snappy
+	sci-biology/seqan"
+
+src_prepare() {
+	eautoreconf
+	eapply_user
+}

diff --git a/sci-libs/libmaus2/metadata.xml b/sci-libs/libmaus2/metadata.xml
new file mode 100644
index 0000000..1541e62
--- /dev/null
+++ b/sci-libs/libmaus2/metadata.xml
@@ -0,0 +1,20 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>sci-biology@g.o</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+  <longdescription lang="en">
+libmaus is a collection of data structures and algorithms. It contains
+
+I/O classes (single byte and UTF-8)
+	bitio classes (input, output and various forms of bit level manipulation)
+	text indexing classes (suffix and LCP array, fulltext and minute (FM), ...)
+	BAM sequence alignment files input/output (simple and collating)
+	and many lower level support classes.
+</longdescription>
+  <upstream>
+    <remote-id type="github">gt1/libmaus</remote-id>
+  </upstream>
+</pkgmetadata>