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commit: 135c9b37558224c81bdec906c505df3e62d0b608 |
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Author: Horea Christian <chr <AT> chymera <DOT> eu> |
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AuthorDate: Mon Nov 25 17:54:53 2019 +0000 |
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Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> |
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CommitDate: Mon Nov 25 17:54:53 2019 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=135c9b37 |
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|
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sci-biology/ants: version bump 2.3.1_p20191013 |
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|
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Package-Manager: Portage-2.3.79, Repoman-2.3.18 |
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Signed-off-by: Horea Christian <chr <AT> chymera.eu> |
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|
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sci-biology/ants/ants-2.3.1_p20191013.ebuild | 72 ++++++++++++++++++++++++++++ |
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sci-biology/ants/metadata.xml | 5 +- |
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2 files changed, 76 insertions(+), 1 deletion(-) |
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|
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diff --git a/sci-biology/ants/ants-2.3.1_p20191013.ebuild b/sci-biology/ants/ants-2.3.1_p20191013.ebuild |
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new file mode 100644 |
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index 000000000..5dd2c8145 |
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--- /dev/null |
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+++ b/sci-biology/ants/ants-2.3.1_p20191013.ebuild |
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@@ -0,0 +1,72 @@ |
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+# Copyright 1999-2019 Gentoo Authors |
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+# Distributed under the terms of the GNU General Public License v2 |
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+ |
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+EAPI=7 |
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+ |
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+CMAKE_MAKEFILE_GENERATOR="emake" |
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+ |
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+inherit cmake-utils git-r3 multilib |
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+ |
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+DESCRIPTION="Advanced Normalitazion Tools for neuroimaging" |
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+HOMEPAGE="http://stnava.github.io/ANTs/" |
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+SRC_URI=" |
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+ test? ( |
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+ http://chymera.eu/distfiles/ants_testdata-${PV}.tar.xz |
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+ ) |
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+" |
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+EGIT_REPO_URI="https://github.com/stnava/ANTs.git" |
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+EGIT_COMMIT="f78b2d4a382d3090230641b5ade5da28962dad04" |
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+ |
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+SLOT="0" |
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+LICENSE="BSD" |
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+KEYWORDS="~amd64 ~x86" |
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+IUSE="test vtk" |
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+ |
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+DEPEND=" |
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+ vtk? ( |
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+ ~sci-libs/itk-5.0.1[vtkglue] |
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+ sci-libs/vtk |
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+ ) |
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+ !vtk? ( ~sci-libs/itk-5.0.1 ) |
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+" |
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+RDEPEND="${DEPEND}" |
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+ |
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+PATCHES=( |
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+ "${FILESDIR}/${P}-logic.patch" |
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+ "${FILESDIR}/${P}-paths.patch" |
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+) |
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+ |
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+src_unpack() { |
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+ git-r3_src_unpack |
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+ if use test; then |
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+ mkdir -p "${S}/.ExternalData/MD5" || die "Could not create test data directory." |
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+ tar xvf "${DISTDIR}/ants_testdata-${PV}.tar.xz" -C "${S}/.ExternalData/MD5/" > /dev/null || die "Could not unpack test data." |
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+ fi |
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+} |
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+ |
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+src_configure() { |
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+ local mycmakeargs=( |
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+ -DUSE_SYSTEM_ITK=ON |
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+ -DITK_DIR="/usr/include/ITK-5.0/" |
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+ -DBUILD_TESTING="$(usex test ON OFF)" |
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+ -DUSE_VTK=$(usex vtk ON OFF) |
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+ -DUSE_SYSTEM_VTK=$(usex vtk ON OFF) |
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+ ) |
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+ use vtk && mycmakeargs+=( |
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+ -DVTK_DIR="/usr/include/vtk-8.1/" |
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+ ) |
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+ use test && mycmakeargs+=( |
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+ -DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5" |
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+ ) |
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+ cmake-utils_src_configure |
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+} |
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+ |
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+src_install() { |
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+ BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build" |
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+ cmake-utils_src_install |
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+ cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found" |
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+ dobin *.sh |
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+ dodir /usr/$(get_libdir)/ants |
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+ install -t "${D}"/usr/$(get_libdir)/ants * || die |
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+ doenvd "${FILESDIR}"/99ants |
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+} |
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|
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diff --git a/sci-biology/ants/metadata.xml b/sci-biology/ants/metadata.xml |
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index 6d6b0d88a..87d2feb05 100644 |
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--- a/sci-biology/ants/metadata.xml |
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+++ b/sci-biology/ants/metadata.xml |
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@@ -2,7 +2,7 @@ |
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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<pkgmetadata> |
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<maintainer type="person"> |
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- <email>horea.christ@×××××.com</email> |
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+ <email>chr@×××××××.eu</email> |
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<name>Horea Christian</name> |
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</maintainer> |
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<maintainer type="project"> |
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@@ -18,4 +18,7 @@ |
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image analysis. ANTs depends on the Insight ToolKit (ITK), a widely used |
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medical image processing library to which ANTs developers contribute. |
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</longdescription> |
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+ <use> |
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+ <flag name="vtk">Optional support for a number of surface enabled tools (via sci-libs/vtk).</flag> |
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+ </use> |
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</pkgmetadata> |