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commit: 21729f2ab37071b29b5419db9b6916f65135687d |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Thu Jun 26 13:49:09 2014 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Thu Jun 26 13:49:09 2014 +0000 |
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URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=21729f2a |
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|
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sci-biology/barrnap: working ebuild although installing a pre-compiled binary and until somebody hacks teh main perl code it need to be installed into /usr/share/{PN} and modifies PATH accordingly |
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|
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Package-Manager: portage-2.2.7 |
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|
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--- |
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sci-biology/barrnap/ChangeLog | 15 +++++++++++++++ |
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sci-biology/barrnap/barrnap-0.3.ebuild | 18 ++++++++++++++++++ |
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2 files changed, 33 insertions(+) |
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|
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diff --git a/sci-biology/barrnap/ChangeLog b/sci-biology/barrnap/ChangeLog |
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index df39571..c90ac20 100644 |
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--- a/sci-biology/barrnap/ChangeLog |
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+++ b/sci-biology/barrnap/ChangeLog |
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@@ -2,6 +2,21 @@ |
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# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 |
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# $Header: $ |
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|
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+ 26 Jun 2014; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> barrnap-0.3.ebuild: |
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+ sci-biology/barrnap: working ebuild although installing a pre-compiled binary |
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+ and until somebody hacks teh main perl code it need to be installed into |
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+ /usr/share/ and modifies |
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+ /home/mmokrejs/bin:/usr/local/bin:/usr/bin:/bin:/opt/bin:/usr/x86_64-pc-linux- |
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+ gnu/gcc-bin/4.8.2:/opt/vmware/bin:/opt/ucsc-genome-browser/bin:/opt/Apollo:/op |
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+ t/Tablet:$PATH:/usr/share/cgview_comparison_tool/scripts:/opt/meme/bin:/opt/45 |
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+ 4/bin:/usr/local/pedant/PEDANT2/soft/PEDANT2/PERL:/home/mokrejs/proj/pedant- |
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+ tools/perl:/home/mokrejs/proj/mysql-tools::/usr/local/staden-linux-1-6-0 |
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+ /linux-bin/:/home/mmokrejs/software/i386_linux24/usr/local/bin:/home/mmokrejs/ |
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+ bin/SPDBV:/home/mmokrejs/bin/PDBViewer_230303:/home/mmokrejs/bin/AstexViewer2/ |
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+ bin:/usr/local/modeller9v4/bin:/usr/local/chimera/bin:/opt/454/bin:/usr/local/ |
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+ pedant/PEDANT2/soft/PEDANT2/PERL:/home/mokrejs/proj/pedant- |
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+ tools/perl:/home/mokrejs/proj/mysql-tools: accordingly |
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+ |
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*barrnap-0.3 (15 Apr 2014) |
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|
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15 Apr 2014; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> +barrnap-0.3.ebuild, |
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|
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diff --git a/sci-biology/barrnap/barrnap-0.3.ebuild b/sci-biology/barrnap/barrnap-0.3.ebuild |
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index f5af3ab..68901a7 100644 |
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--- a/sci-biology/barrnap/barrnap-0.3.ebuild |
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+++ b/sci-biology/barrnap/barrnap-0.3.ebuild |
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@@ -19,4 +19,22 @@ IUSE="" |
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|
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DEPEND="" |
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RDEPEND="${DEPEND} |
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+ >=dev-lang/perl-5.6 |
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sci-biology/nesoni" |
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+ |
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+src_install(){ |
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+ # the below recreates the whole layout |
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+ insinto /usr/share/"${PN}" |
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+ doins barrnap |
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+ chmod a+rx "${D}"/usr/share/"${PN}"/barrnap |
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+ insinto /usr/share/"${PN}"/binaries |
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+ doins binaries/nhmmer.linux |
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+ chmod a+rx "${D}"/usr/share/"${PN}"/binaries/nhmmer.linux |
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+ insinto /usr/share/"${PN}"/db |
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+ doins db/* |
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+ insinto /usr/share/examples |
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+ doins examples/* |
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+ |
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+ echo PATH=/usr/share/"${PN}":$PATH > "${S}"/99barrnap |
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+ doenvd "${S}"/99barrnap |
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+} |