[gentoo-commits] proj/sci:master commit in: sci-biology/deeptools/

[Martin Mokrejs]

commit:     b0176e52f19303e32d2797d6b41273a70dfb2b2c
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Mar 31 21:10:09 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Mar 31 21:10:09 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=b0176e52

sci-biology/deeptools: add new package

Package-Manager: Portage-2.3.5, Repoman-2.3.1

 sci-biology/deeptools/deeptools-2.5.0.ebuild | 32 ++++++++++++++++++++++++++++
 sci-biology/deeptools/deeptools-9999.ebuild  | 32 ++++++++++++++++++++++++++++
 sci-biology/deeptools/metadata.xml           | 12 +++++++++++
 3 files changed, 76 insertions(+)

diff --git a/sci-biology/deeptools/deeptools-2.5.0.ebuild b/sci-biology/deeptools/deeptools-2.5.0.ebuild
new file mode 100644
index 000000000..e69672942
--- /dev/null
+++ b/sci-biology/deeptools/deeptools-2.5.0.ebuild
@@ -0,0 +1,32 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 python3_5 )
+
+inherit distutils-r1
+
+[ "$PV" == "9999" ] && inherit git-2
+
+DESCRIPTION="Extract reads from BAM files, normalize, draw figures, convert BAM to bigWig"
+HOMEPAGE="https://github.com/fidelram/deepTools"
+if [ "$PV" == "9999" ]; then
+	EGIT_REPO_URI="https://github.com/fidelram/deepTools"
+	KEYWORDS=""
+else
+	SRC_URI="https://github.com/fidelram/deepTools/archive/2.5.0.tar.gz -> ${P}.tar.gz"
+	KEYWORDS="~amd64"
+fi
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE=""
+
+DEPEND=">=dev-python/numpy-1.8.0
+		>=sci-libs/scipy-0.17.0
+		>=dev-python/py2bit-0.1.0
+		>=dev-python/pyBigWig-0.2.1
+		>=sci-biology/pysam-0.8
+		>=dev-python/matplotlib-1.4.0"
+RDEPEND="${DEPEND}"

diff --git a/sci-biology/deeptools/deeptools-9999.ebuild b/sci-biology/deeptools/deeptools-9999.ebuild
new file mode 100644
index 000000000..a2c1fcfb9
--- /dev/null
+++ b/sci-biology/deeptools/deeptools-9999.ebuild
@@ -0,0 +1,32 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 python3_5 )
+
+inherit distutils-r1
+
+[ "$PV" == "9999" ] && inherit git-2
+
+DESCRIPTION="Extract reads from BAM files, normalize, draw figures, convert BAM to bigWig"
+HOMEPAGE="https://github.com/fidelram/deepTools"
+if [ "$PV" == "9999" ]; then
+	EGIT_REPO_URI="https://github.com/fidelram/deepTools"
+	KEYWORDS=""
+else
+	SRC_URI="https://github.com/fidelram/deepTools/archive/2.5.0.tar.gz -> ${P}.tar.gz"
+	KEYWORDS="~amd64"
+fi
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE=""
+
+DEPEND=">=dev-python/numpy-1.8.0
+		>=sci-libs/scipy-0.17.0
+		>=dev-python/py2bit-0.1.0
+		>=dev-python/pyBigWig-0.2.1
+		>=sci-biology/pysam-0.8
+		>=dev-python/matplotlib-1.4.0"
+RDEPEND="${DEPEND}"

diff --git a/sci-biology/deeptools/metadata.xml b/sci-biology/deeptools/metadata.xml
new file mode 100644
index 000000000..f68a1b6fa
--- /dev/null
+++ b/sci-biology/deeptools/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="person">
+    <email>mmokrejs@×××××××××××××××.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>sci-biology@g.o</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+</pkgmetadata>