[gentoo-commits] gentoo-x86 commit in sci-biology/paml: ChangeLog paml-4.4c.ebuild paml-4.1.ebuild paml-4.2b-r1.ebuild

[Kacper Kowalik (xarthisius)]

xarthisius    10/09/02 06:56:14

  Modified:             ChangeLog
  Added:                paml-4.4c.ebuild
  Removed:              paml-4.1.ebuild paml-4.2b-r1.ebuild
  Log:
  Version bump. Fixes bug 335608. Thanks to Diego for report.
  
  (Portage version: 2.2_rc72/cvs/Linux x86_64)

Revision  Changes    Path
1.12                 sci-biology/paml/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/paml/ChangeLog?rev=1.12&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/paml/ChangeLog?rev=1.12&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/paml/ChangeLog?r1=1.11&r2=1.12

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -r1.11 -r1.12
--- ChangeLog	9 Feb 2010 11:17:38 -0000	1.11
+++ ChangeLog	2 Sep 2010 06:56:14 -0000	1.12
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/paml
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.11 2010/02/09 11:17:38 pacho Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.12 2010/09/02 06:56:14 xarthisius Exp $
+
+*paml-4.4c (02 Sep 2010)
+
+  02 Sep 2010; Kacper Kowalik <xarthisius@g.o> -paml-4.1.ebuild,
+  -paml-4.2b-r1.ebuild, +paml-4.4c.ebuild:
+  Version bump. Fixes bug 335608. Thanks to Diego for report.
 
   09 Feb 2010; Pacho Ramos <pacho@g.o> paml-4.3a.ebuild:
   amd64 stable, bug 298772



1.1                  sci-biology/paml/paml-4.4c.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/paml/paml-4.4c.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/paml/paml-4.4c.ebuild?rev=1.1&content-type=text/plain

Index: paml-4.4c.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4.4c.ebuild,v 1.1 2010/09/02 06:56:14 xarthisius Exp $

EAPI="2"

inherit toolchain-funcs versionator

MY_P=$(version_format_string '${PN}$1$2')

DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood"
HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html"
SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz"

LICENSE="free-noncomm"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""

S=${WORKDIR}/${MY_P}

src_prepare() {
	# Notice send by mail to prof. Ziheng Yang
	sed -i "s/\$(CC)/& \$(LDFLAGS)/" src/Makefile || die #335608
}

src_compile() {
	emake -C src CC="$(tc-getCC)" \
		CFLAGS="${CFLAGS}" LDFLAGS="${LDFLAGS}" || die
}

src_install() {
	pushd "${S}"/src
	dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2 || die
	popd
	dodoc README.txt doc/* || die
	insinto /usr/share/${PN}/control
	doins *.ctl || die "Failed to install control files"
	insinto /usr/share/${PN}/dat
	doins stewart* *.dat dat/* || die "Failed to install data files"
	insinto /usr/share/${PN}
	doins -r examples/ || die "Failed to install examples"
}