[gentoo-commits] proj/sci:master commit in: sci-biology/biopieces/

[Horea Christian]

commit:     39df6200aad813e9488a21850b8b7b954b521dbd
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sat Sep 26 09:40:59 2020 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sat Sep 26 09:40:59 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=39df6200

sci-biology/biopieces: Removed package with deprecated dep

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/biopieces/biopieces-0.51.ebuild | 71 -----------------------------
 sci-biology/biopieces/biopieces-9999.ebuild | 71 -----------------------------
 sci-biology/biopieces/metadata.xml          | 12 -----
 3 files changed, 154 deletions(-)

diff --git a/sci-biology/biopieces/biopieces-0.51.ebuild b/sci-biology/biopieces/biopieces-0.51.ebuild
deleted file mode 100644
index 03a9d78cc..000000000
--- a/sci-biology/biopieces/biopieces-0.51.ebuild
+++ /dev/null
@@ -1,71 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-USE_RUBY="ruby22 ruby23 ruby24"
-
-if [ "$PV" == "9999" ]; then
-	ESVN_REPO_URI="http://biopieces.googlecode.com/svn/trunk"
-	KEYWORDS=""
-	inherit subversion
-else
-	SRC_URI="http://biopieces.googlecode.com/files/biopieces_installer-${PV}.sh"
-	KEYWORDS=""
-fi
-
-inherit ruby-fakegem python-single-r1
-
-DESCRIPTION="Trim adaptors, plot read lengths, qualities, map reads and submit to GenBank"
-HOMEPAGE="http://code.google.com/p/biopieces"
-SRC_URI=""
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE="test"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-#    Ruby terminal-table ?
-
-CDEPEND="${PYTHON_DEPS}
-	>=dev-lang/perl-5.8
-	dev-perl/libwww-perl
-	dev-perl/Bit-Vector
-	dev-perl/Carp-Clan
-	dev-perl/Class-Inspector
-	dev-perl/DBD-mysql
-	dev-perl/DBI
-	dev-perl/HTML-Parser
-	dev-perl/Inline
-	dev-perl/Parse-RecDescent
-	dev-perl/SOAP-Lite
-	dev-perl/SVG
-	dev-perl/TermReadKey
-	dev-perl/URI
-	dev-perl/XML-Parser
-	virtual/perl-version
-	virtual/perl-DB_File
-	virtual/perl-Time-HiRes"
-
-DEPEND="${CDEPEND}"
-
-ruby_add_bdepend "dev-ruby/RubyInline"
-ruby_add_rdepend "dev-ruby/gnuplot dev-ruby/narray"
-
-# sci-biology/vmatch # http://www.vmatch.de/ # fecth restrict
-# sci-biology/usearch-bin # http://www.drive5.com/usearch/ # fecth restrict
-
-RDEPEND="${CDEPEND}
-	sci-biology/ncbi-tools
-	sci-biology/muscle
-	sci-biology/mummer
-	sci-biology/blat
-	sci-biology/bowtie
-	sci-biology/bwa
-	sci-biology/velvet
-	sci-biology/Ray
-	sci-biology/scan_for_matches
-	sci-biology/idba"

diff --git a/sci-biology/biopieces/biopieces-9999.ebuild b/sci-biology/biopieces/biopieces-9999.ebuild
deleted file mode 100644
index 03a9d78cc..000000000
--- a/sci-biology/biopieces/biopieces-9999.ebuild
+++ /dev/null
@@ -1,71 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-USE_RUBY="ruby22 ruby23 ruby24"
-
-if [ "$PV" == "9999" ]; then
-	ESVN_REPO_URI="http://biopieces.googlecode.com/svn/trunk"
-	KEYWORDS=""
-	inherit subversion
-else
-	SRC_URI="http://biopieces.googlecode.com/files/biopieces_installer-${PV}.sh"
-	KEYWORDS=""
-fi
-
-inherit ruby-fakegem python-single-r1
-
-DESCRIPTION="Trim adaptors, plot read lengths, qualities, map reads and submit to GenBank"
-HOMEPAGE="http://code.google.com/p/biopieces"
-SRC_URI=""
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE="test"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-#    Ruby terminal-table ?
-
-CDEPEND="${PYTHON_DEPS}
-	>=dev-lang/perl-5.8
-	dev-perl/libwww-perl
-	dev-perl/Bit-Vector
-	dev-perl/Carp-Clan
-	dev-perl/Class-Inspector
-	dev-perl/DBD-mysql
-	dev-perl/DBI
-	dev-perl/HTML-Parser
-	dev-perl/Inline
-	dev-perl/Parse-RecDescent
-	dev-perl/SOAP-Lite
-	dev-perl/SVG
-	dev-perl/TermReadKey
-	dev-perl/URI
-	dev-perl/XML-Parser
-	virtual/perl-version
-	virtual/perl-DB_File
-	virtual/perl-Time-HiRes"
-
-DEPEND="${CDEPEND}"
-
-ruby_add_bdepend "dev-ruby/RubyInline"
-ruby_add_rdepend "dev-ruby/gnuplot dev-ruby/narray"
-
-# sci-biology/vmatch # http://www.vmatch.de/ # fecth restrict
-# sci-biology/usearch-bin # http://www.drive5.com/usearch/ # fecth restrict
-
-RDEPEND="${CDEPEND}
-	sci-biology/ncbi-tools
-	sci-biology/muscle
-	sci-biology/mummer
-	sci-biology/blat
-	sci-biology/bowtie
-	sci-biology/bwa
-	sci-biology/velvet
-	sci-biology/Ray
-	sci-biology/scan_for_matches
-	sci-biology/idba"

diff --git a/sci-biology/biopieces/metadata.xml b/sci-biology/biopieces/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-biology/biopieces/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@×××××××××××××××.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@g.o</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-</pkgmetadata>