[gentoo-commits] proj/sci:master commit in: sci-biology/nilearn/

[Horea Christian]

commit:     fc7dbd7aa8e860273be160ba12918e6dbb77e794
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sat Sep 26 10:14:00 2020 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sat Sep 26 10:14:00 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=fc7dbd7a

sci-biology/nilearn: dropped old version, updated live version

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/nilearn/nilearn-0.4.2.ebuild | 53 --------------------------------
 sci-biology/nilearn/nilearn-9999.ebuild  | 32 +++++++++++--------
 2 files changed, 20 insertions(+), 65 deletions(-)

diff --git a/sci-biology/nilearn/nilearn-0.4.2.ebuild b/sci-biology/nilearn/nilearn-0.4.2.ebuild
deleted file mode 100644
index c850c3ffb..000000000
--- a/sci-biology/nilearn/nilearn-0.4.2.ebuild
+++ /dev/null
@@ -1,53 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
-
-inherit distutils-r1
-
-DESCRIPTION="Fast and easy statistical learning on NeuroImaging data"
-HOMEPAGE="http://nilearn.github.io/"
-SRC_URI="https://github.com/nilearn/nilearn/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="+plot test"
-
-DEPEND="
-	test? (
-		${RDEPEND}
-		dev-python/nose[${PYTHON_USEDEP}]
-		)
-	dev-python/setuptools[${PYTHON_USEDEP}]
-	"
-RDEPEND="
-	dev-python/joblib[${PYTHON_USEDEP}]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	sci-libs/scikits_learn[${PYTHON_USEDEP}]
-	dev-python/scipy[${PYTHON_USEDEP}]
-	sci-libs/nibabel[${PYTHON_USEDEP}]
-	plot? ( dev-python/matplotlib[${PYTHON_USEDEP}] )"
-
-PATCHES=( "${FILESDIR}/0.4.1-bundled_joblib_test.patch" )
-
-python_prepare_all() {
-	# upstream is reluctant to *not* depend on bundled scikits_learn:
-	# https://github.com/nilearn/nilearn/pull/1398
-	local f
-	for f in nilearn/{*/*/,*/,}*.py; do
-		sed -r \
-			-e '/^from/s/(sklearn|\.|)\.externals\.joblib/joblib/' \
-			-e 's/from (sklearn|\.|)\.externals import/import/' \
-		-i $f || die
-	done
-
-	distutils-r1_python_prepare_all
-}
-
-python_test() {
-	echo "backend: Agg" > matplotlibrc
-	MPLCONFIGDIR=. nosetests -v || die
-}

diff --git a/sci-biology/nilearn/nilearn-9999.ebuild b/sci-biology/nilearn/nilearn-9999.ebuild
index 036c0f93b..f762b38a7 100644
--- a/sci-biology/nilearn/nilearn-9999.ebuild
+++ b/sci-biology/nilearn/nilearn-9999.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
 
-PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+PYTHON_COMPAT=( python3_{6,7} )
 
 inherit distutils-r1 git-r3
 
@@ -14,9 +14,12 @@ EGIT_REPO_URI="https://github.com/nilearn/nilearn"
 
 LICENSE="BSD"
 SLOT="0"
-KEYWORDS=""
+KEYWORDS="~amd64 ~x86"
 IUSE="+plot test"
 
+# Tests attempt to download external data.
+RESTRICT="test"
+
 DEPEND="
 	test? (
 		${RDEPEND}
@@ -32,23 +35,28 @@ RDEPEND="
 	sci-libs/nibabel[${PYTHON_USEDEP}]
 	plot? ( dev-python/matplotlib[${PYTHON_USEDEP}] )"
 
-PATCHES=( "${FILESDIR}/0.4.1-bundled_joblib_test.patch" )
+# (Temporarily) commented out, since Gentoo sci-libs/scikits_learn decided it
+# is a mess to maintain system joblib usage
+#PATCHES=( "${FILESDIR}/0.4.1-bundled_joblib_test.patch" )
 
 python_prepare_all() {
 	# upstream is reluctant to *not* depend on bundled scikits_learn:
 	# https://github.com/nilearn/nilearn/pull/1398
-	local f
-	for f in nilearn/{*/*/,*/,}*.py; do
-		sed -r \
-			-e '/^from/s/(sklearn|\.|)\.externals\.joblib/joblib/' \
-			-e 's/from (sklearn|\.|)\.externals import/import/' \
-		-i $f || die
-	done
+	# (Temporarily) commented out, since Gentoo sci-libs/scikits_learn decided it
+	# is a mess to maintain system joblib usage
+	#local f
+	#for f in nilearn/{*/*/,*/,}*.py; do
+	#	sed -r \
+	#		-e '/^from/s/(sklearn|\.|)\.externals\.joblib/joblib/' \
+	#		-e 's/from (sklearn|\.|)\.externals import/import/' \
+	#	-i $f || die
+	#done
 
 	distutils-r1_python_prepare_all
 }
 
 python_test() {
 	echo "backend: Agg" > matplotlibrc
-	MPLCONFIGDIR=. nosetests -v || die
+	#MPLCONFIGDIR=. nosetests -v || die
+	MPLCONFIGDIR=. pytest -vv || die
 }