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commit: c7d12eab1de43f052d778980e5d6b8bc016d9141 |
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Author: David Seifert <soap <AT> gentoo <DOT> org> |
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AuthorDate: Sat Sep 2 12:45:45 2017 +0000 |
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Commit: David Seifert <soap <AT> gentoo <DOT> org> |
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CommitDate: Sat Sep 2 12:45:45 2017 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c7d12eab |
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|
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sci-biology/bcftools: Remove old |
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|
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sci-biology/bcftools/bcftools-1.3.1.ebuild | 29 ----------------------------- |
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sci-biology/bcftools/bcftools-1.4.ebuild | 29 ----------------------------- |
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sci-biology/bcftools/bcftools-1.5.ebuild | 29 ----------------------------- |
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sci-biology/bcftools/metadata.xml | 15 --------------- |
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4 files changed, 102 deletions(-) |
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|
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diff --git a/sci-biology/bcftools/bcftools-1.3.1.ebuild b/sci-biology/bcftools/bcftools-1.3.1.ebuild |
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deleted file mode 100644 |
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index b194609b6..000000000 |
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--- a/sci-biology/bcftools/bcftools-1.3.1.ebuild |
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+++ /dev/null |
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@@ -1,29 +0,0 @@ |
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-# Copyright 1999-2017 Gentoo Foundation |
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-# Distributed under the terms of the GNU General Public License v2 |
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- |
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-EAPI=5 |
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- |
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-inherit toolchain-funcs |
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- |
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-DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" |
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-HOMEPAGE="http://www.htslib.org" |
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-SRC_URI="https://github.com/samtools/bcftools/releases/download/"${PV}"/"${P}".tar.bz2" |
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- |
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-LICENSE="MIT" |
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-SLOT="0" |
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-KEYWORDS="~amd64" |
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-IUSE="" |
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- |
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-# compiles bundled sci-libs/htslib-"${PV}" as a static library and links it into binaries |
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-DEPEND="dev-lang/perl" |
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-RDEPEND="${DEPEND}" |
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- |
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-src_prepare(){ |
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- sed -e "s@gcc@$(tc-getCC)@" \ |
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- -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \ |
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- -e "s@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = ${CFLAGS}@" -i Makefile || die |
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- |
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- sed -e "s@gcc@$(tc-getCC)@" \ |
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- -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \ |
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- -e "s@CFLAGS = -g -Wall -O2@#CFLAGS = ${CFLAGS}@" -i htslib-*/Makefile || die |
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-} |
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|
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diff --git a/sci-biology/bcftools/bcftools-1.4.ebuild b/sci-biology/bcftools/bcftools-1.4.ebuild |
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deleted file mode 100644 |
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index b194609b6..000000000 |
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--- a/sci-biology/bcftools/bcftools-1.4.ebuild |
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+++ /dev/null |
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@@ -1,29 +0,0 @@ |
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-# Copyright 1999-2017 Gentoo Foundation |
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-# Distributed under the terms of the GNU General Public License v2 |
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- |
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-EAPI=5 |
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- |
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-inherit toolchain-funcs |
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- |
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-DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" |
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-HOMEPAGE="http://www.htslib.org" |
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-SRC_URI="https://github.com/samtools/bcftools/releases/download/"${PV}"/"${P}".tar.bz2" |
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- |
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-LICENSE="MIT" |
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-SLOT="0" |
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-KEYWORDS="~amd64" |
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-IUSE="" |
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- |
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-# compiles bundled sci-libs/htslib-"${PV}" as a static library and links it into binaries |
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-DEPEND="dev-lang/perl" |
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-RDEPEND="${DEPEND}" |
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- |
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-src_prepare(){ |
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- sed -e "s@gcc@$(tc-getCC)@" \ |
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- -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \ |
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- -e "s@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = ${CFLAGS}@" -i Makefile || die |
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- |
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- sed -e "s@gcc@$(tc-getCC)@" \ |
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- -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \ |
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- -e "s@CFLAGS = -g -Wall -O2@#CFLAGS = ${CFLAGS}@" -i htslib-*/Makefile || die |
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-} |
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|
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diff --git a/sci-biology/bcftools/bcftools-1.5.ebuild b/sci-biology/bcftools/bcftools-1.5.ebuild |
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deleted file mode 100644 |
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index b194609b6..000000000 |
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--- a/sci-biology/bcftools/bcftools-1.5.ebuild |
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+++ /dev/null |
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@@ -1,29 +0,0 @@ |
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-# Copyright 1999-2017 Gentoo Foundation |
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-# Distributed under the terms of the GNU General Public License v2 |
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- |
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-EAPI=5 |
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- |
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-inherit toolchain-funcs |
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- |
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-DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" |
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-HOMEPAGE="http://www.htslib.org" |
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-SRC_URI="https://github.com/samtools/bcftools/releases/download/"${PV}"/"${P}".tar.bz2" |
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- |
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-LICENSE="MIT" |
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-SLOT="0" |
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-KEYWORDS="~amd64" |
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-IUSE="" |
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- |
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-# compiles bundled sci-libs/htslib-"${PV}" as a static library and links it into binaries |
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-DEPEND="dev-lang/perl" |
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-RDEPEND="${DEPEND}" |
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- |
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-src_prepare(){ |
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- sed -e "s@gcc@$(tc-getCC)@" \ |
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- -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \ |
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- -e "s@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = ${CFLAGS}@" -i Makefile || die |
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- |
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- sed -e "s@gcc@$(tc-getCC)@" \ |
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- -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \ |
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- -e "s@CFLAGS = -g -Wall -O2@#CFLAGS = ${CFLAGS}@" -i htslib-*/Makefile || die |
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-} |
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|
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diff --git a/sci-biology/bcftools/metadata.xml b/sci-biology/bcftools/metadata.xml |
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deleted file mode 100644 |
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index d65c87aa3..000000000 |
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--- a/sci-biology/bcftools/metadata.xml |
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+++ /dev/null |
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@@ -1,15 +0,0 @@ |
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-<?xml version='1.0' encoding='UTF-8'?> |
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-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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-<pkgmetadata> |
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- <maintainer type="person"> |
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- <email>mmokrejs@×××××××××××××××.cz</email> |
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- <name>Martin Mokrejs</name> |
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- </maintainer> |
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- <maintainer type="project"> |
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- <email>sci-biology@g.o</email> |
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- <name>Gentoo Biology Project</name> |
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- </maintainer> |
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- <upstream> |
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- <remote-id type="github">samtools/bcftools</remote-id> |
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- </upstream> |
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-</pkgmetadata> |
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