[gentoo-commits] gentoo-x86 commit in sci-biology/hmmer: hmmer-3.0_beta2.ebuild ChangeLog hmmer-3.0_beta1.ebuild

[Andrey Kislyuk (weaver)]

weaver      09/08/30 19:04:50

  Modified:             ChangeLog
  Added:                hmmer-3.0_beta2.ebuild
  Removed:              hmmer-3.0_beta1.ebuild
  Log:
  Bump and add parallel make workaround, bug 282813
  (Portage version: 2.2_rc30/cvs/Linux x86_64)

Revision  Changes    Path
1.26                 sci-biology/hmmer/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/hmmer/ChangeLog?rev=1.26&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/hmmer/ChangeLog?rev=1.26&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/hmmer/ChangeLog?r1=1.25&r2=1.26

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v
retrieving revision 1.25
retrieving revision 1.26
diff -u -r1.25 -r1.26
--- ChangeLog	21 Jun 2009 15:29:37 -0000	1.25
+++ ChangeLog	30 Aug 2009 19:04:50 -0000	1.26
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/hmmer
 # Copyright 2000-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.25 2009/06/21 15:29:37 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.26 2009/08/30 19:04:50 weaver Exp $
+
+*hmmer-3.0_beta2 (30 Aug 2009)
+
+  30 Aug 2009; Andrey Kislyuk <weaver@g.o> +hmmer-3.0_beta2.ebuild:
+  Bump and add parallel make workaround, bug 282813
 
 *hmmer-3.0_beta1 (21 Jun 2009)
 



1.1                  sci-biology/hmmer/hmmer-3.0_beta2.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/hmmer/hmmer-3.0_beta2.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/hmmer/hmmer-3.0_beta2.ebuild?rev=1.1&content-type=text/plain

Index: hmmer-3.0_beta2.ebuild
===================================================================
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/hmmer-3.0_beta2.ebuild,v 1.1 2009/08/30 19:04:50 weaver Exp $

EAPI="2"

MY_P="hmmer-3.0b2"

DESCRIPTION="Sequence analysis using profile hidden Markov models"
HOMEPAGE="http://hmmer.janelia.org/"
SRC_URI="ftp://selab.janelia.org/pub/software/hmmer3/${MY_P}.tar.gz"

LICENSE="GPL-3"
SLOT="0"
IUSE="sse mpi threads" # gsl
KEYWORDS="~amd64 ~x86"

# NB: compile failure with mpi, disabling temporarily
# gsl? ( sci-libs/gsl )
# mpi? ( virtual/mpi )
DEPEND=""
RDEPEND="${DEPEND}"

S="${WORKDIR}/${MY_P}"

src_configure() {
	econf $(use_enable sse) \
		$(use_enable threads) || die
#		$(use_enable mpi) \
#		$(use_with gsl) || die
}

src_compile() {
	emake -j1 || die
}

src_install() {
	emake DESTDIR="${D}" install || die
	dolib src/libhmmer.a || die
	dolib easel/libeasel.a || die
	insinto /usr/share/${PN}
	doins -r tutorial || die
	dodoc RELEASE-NOTES Userguide.pdf
}