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| From: | "Patrick Lauer (patrick)" <patrick@g.o> |
|---|---|
| To: | gentoo-commits@l.g.o |
| Subject: | [gentoo-commits] gentoo-x86 commit in dev-perl/Bio-SamTools: Bio-SamTools-1.390.0.ebuild ChangeLog |
| Date: | Tue, 03 Sep 2013 05:22:02 |
| Message-Id: | 20130903052155.CCF8F2004C@flycatcher.gentoo.org |
| 1 | patrick 13/09/03 05:21:55 |
| 2 | |
| 3 | Modified: ChangeLog |
| 4 | Added: Bio-SamTools-1.390.0.ebuild |
| 5 | Log: |
| 6 | Bump |
| 7 | |
| 8 | (Portage version: 2.2.1/cvs/Linux x86_64, unsigned Manifest commit) |
| 9 | |
| 10 | Revision Changes Path |
| 11 | 1.12 dev-perl/Bio-SamTools/ChangeLog |
| 12 | |
| 13 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?rev=1.12&view=markup |
| 14 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?rev=1.12&content-type=text/plain |
| 15 | diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?r1=1.11&r2=1.12 |
| 16 | |
| 17 | Index: ChangeLog |
| 18 | =================================================================== |
| 19 | RCS file: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v |
| 20 | retrieving revision 1.11 |
| 21 | retrieving revision 1.12 |
| 22 | diff -u -r1.11 -r1.12 |
| 23 | --- ChangeLog 17 Aug 2013 14:02:59 -0000 1.11 |
| 24 | +++ ChangeLog 3 Sep 2013 05:21:55 -0000 1.12 |
| 25 | @@ -1,6 +1,11 @@ |
| 26 | # ChangeLog for dev-perl/Bio-SamTools |
| 27 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 |
| 28 | -# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.11 2013/08/17 14:02:59 patrick Exp $ |
| 29 | +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.12 2013/09/03 05:21:55 patrick Exp $ |
| 30 | + |
| 31 | +*Bio-SamTools-1.390.0 (03 Sep 2013) |
| 32 | + |
| 33 | + 03 Sep 2013; Patrick Lauer <patrick@g.o> +Bio-SamTools-1.390.0.ebuild: |
| 34 | + Bump |
| 35 | |
| 36 | *Bio-SamTools-1.380.0 (17 Aug 2013) |
| 37 | |
| 38 | |
| 39 | |
| 40 | |
| 41 | 1.1 dev-perl/Bio-SamTools/Bio-SamTools-1.390.0.ebuild |
| 42 | |
| 43 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.390.0.ebuild?rev=1.1&view=markup |
| 44 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.390.0.ebuild?rev=1.1&content-type=text/plain |
| 45 | |
| 46 | Index: Bio-SamTools-1.390.0.ebuild |
| 47 | =================================================================== |
| 48 | # Copyright 1999-2013 Gentoo Foundation |
| 49 | # Distributed under the terms of the GNU General Public License v2 |
| 50 | # $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.390.0.ebuild,v 1.1 2013/09/03 05:21:55 patrick Exp $ |
| 51 | |
| 52 | EAPI=4 |
| 53 | |
| 54 | MODULE_AUTHOR=LDS |
| 55 | MODULE_VERSION=1.39 |
| 56 | inherit perl-module |
| 57 | |
| 58 | DESCRIPTION="Read SAM/BAM database files" |
| 59 | |
| 60 | SLOT="0" |
| 61 | KEYWORDS="~amd64 ~x86" |
| 62 | IUSE="" |
| 63 | |
| 64 | RDEPEND="sci-biology/bioperl |
| 65 | >=sci-biology/samtools-0.1.16" |
| 66 | DEPEND="${RDEPEND} |
| 67 | virtual/perl-ExtUtils-CBuilder |
| 68 | virtual/perl-Module-Build |
| 69 | " |
| 70 | |
| 71 | SRC_TEST=do |
| 72 | |
| 73 | src_prepare() { |
| 74 | sed \ |
| 75 | -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \ |
| 76 | -e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' \ |
| 77 | -i Build.PL || die |
| 78 | sed \ |
| 79 | -e 's|#include "bam.h"|#include "bam/bam.h"|' \ |
| 80 | -e 's|#include "sam.h"|#include "bam/sam.h"|' \ |
| 81 | -e 's|#include "khash.h"|#include "bam/khash.h"|' \ |
| 82 | -e 's|#include "faidx.h"|#include "bam/faidx.h"|' \ |
| 83 | -i lib/Bio/DB/Sam.xs c_bin/bam2bedgraph.c || die |
| 84 | |
| 85 | perl-module_src_prepare |
| 86 | } |