[gentoo-commits] proj/sci:master commit in: sci-biology/pysam/

[Justin Lecher]

commit:     94d90ab3b484a298828765dcccac7416741911d2
Author:     Ted Tanberry <ted.tanberry <AT> gmail <DOT> com>
AuthorDate: Thu Dec  3 21:59:00 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Dec  3 21:59:00 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=94d90ab3

sci-biology/pysam: version bump to 0.8.4

Package-Manager: portage-2.2.26

 sci-biology/pysam/ChangeLog          |  5 +++++
 sci-biology/pysam/pysam-0.8.4.ebuild | 27 +++++++++++++++++++++++++++
 2 files changed, 32 insertions(+)

diff --git a/sci-biology/pysam/ChangeLog b/sci-biology/pysam/ChangeLog
index c4c9a54..492a5fc 100644
--- a/sci-biology/pysam/ChangeLog
+++ b/sci-biology/pysam/ChangeLog
@@ -2,6 +2,11 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Id$
 
+*pysam-0.8.4 (03 Dec 2015)
+
+  03 Dec 2015; Ted Tanberry <ted.tanberry@×××××.com> +pysam-0.8.4.ebuild:
+  sci-biology/pysam: version bump to 0.8.4
+
   04 May 2015; Marius Brehler <marbre@××××××××××××××.de> pysam-0.7.5.ebuild:
   Fix deps
 

diff --git a/sci-biology/pysam/pysam-0.8.4.ebuild b/sci-biology/pysam/pysam-0.8.4.ebuild
new file mode 100644
index 0000000..2b4d3d9
--- /dev/null
+++ b/sci-biology/pysam/pysam-0.8.4.ebuild
@@ -0,0 +1,27 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI="5"
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1
+
+DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format"
+HOMEPAGE="https://github.com/pysam-developers/pysam http://pypi.python.org/pypi/pysam"
+SRC_URI="https://github.com/pysam-developers/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]
+	>=sci-biology/samtools-1.2[${PYTHON_USEDEP}]
+	>=sci-libs/htslib-1.2.1"
+
+python_compile() {
+	python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing"
+	distutils-r1_python_compile
+}