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xarthisius 10/10/05 08:27:06 |
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|
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Modified: ChangeLog |
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Added: mothur-1.13.0-r1.ebuild |
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Removed: mothur-1.7.2-r1.ebuild mothur-1.13.0.ebuild |
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Log: |
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Fix buffer overflows and building with --as-needed wrt bug 339753. Thanks to Diego for the report. Correct dependencies. Drop old. |
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|
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(Portage version: 2.2_rc88/cvs/Linux x86_64) |
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|
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Revision Changes Path |
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1.8 sci-biology/mothur/ChangeLog |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mothur/ChangeLog?rev=1.8&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mothur/ChangeLog?rev=1.8&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mothur/ChangeLog?r1=1.7&r2=1.8 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/mothur/ChangeLog,v |
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retrieving revision 1.7 |
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retrieving revision 1.8 |
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diff -u -r1.7 -r1.8 |
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--- ChangeLog 26 Sep 2010 02:30:24 -0000 1.7 |
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+++ ChangeLog 5 Oct 2010 08:27:06 -0000 1.8 |
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@@ -1,6 +1,14 @@ |
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# ChangeLog for sci-biology/mothur |
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# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mothur/ChangeLog,v 1.7 2010/09/26 02:30:24 weaver Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mothur/ChangeLog,v 1.8 2010/10/05 08:27:06 xarthisius Exp $ |
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+ |
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+*mothur-1.13.0-r1 (05 Oct 2010) |
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+ |
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+ 05 Oct 2010; Kacper Kowalik <xarthisius@g.o> |
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+ -mothur-1.7.2-r1.ebuild, -mothur-1.13.0.ebuild, +mothur-1.13.0-r1.ebuild, |
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+ +files/mothur-1.13.0-makefile.patch, +files/mothur-1.13.0-overflows.patch: |
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+ Fix buffer overflows and building with --as-needed wrt bug 339753. Thanks |
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+ to Diego for the report. Correct dependencies. Drop old. |
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|
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*mothur-1.13.0 (26 Sep 2010) |
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1.1 sci-biology/mothur/mothur-1.13.0-r1.ebuild |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mothur/mothur-1.13.0-r1.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mothur/mothur-1.13.0-r1.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: mothur-1.13.0-r1.ebuild |
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=================================================================== |
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# Copyright 1999-2010 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/mothur/mothur-1.13.0-r1.ebuild,v 1.1 2010/10/05 08:27:06 xarthisius Exp $ |
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|
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EAPI="2" |
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|
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inherit eutils toolchain-funcs |
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|
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DESCRIPTION="A suite of algorithms for ecological bioinformatics" |
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HOMEPAGE="http://schloss.micro.umass.edu/wiki/Main_Page" |
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SRC_URI="mirror://gentoo/${P}.zip" |
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|
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LICENSE="GPL-3" |
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SLOT="0" |
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IUSE="mpi +readline" |
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KEYWORDS="~amd64 ~x86" |
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|
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DEPEND="${RDEPEND} |
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app-arch/unzip" |
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RDEPEND="mpi? ( virtual/mpi )" |
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|
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S=${WORKDIR}/Mothur.source |
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|
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pkg_setup() { |
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use mpi && CXX=mpicxx || CXX=$(tc-getCXX) |
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} |
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|
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src_prepare() { |
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epatch "${FILESDIR}"/${P}-makefile.patch \ |
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"${FILESDIR}"/${P}-overflows.patch |
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} |
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|
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use_yn() { |
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useq $1 && echo "yes" || echo "no" |
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} |
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|
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src_compile() { |
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emake USEMPI=$(use_yn mpi) USEREADLINE=$(use_yn readline) || die |
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} |
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|
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src_install() { |
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dobin mothur || die |
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} |
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