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commit: 4b745c04e33c0393c2640637622046f78c2c5636 |
2 |
Author: David Seifert <soap <AT> gentoo <DOT> org> |
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AuthorDate: Sun Dec 29 08:53:12 2019 +0000 |
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Commit: David Seifert <soap <AT> gentoo <DOT> org> |
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CommitDate: Sun Dec 29 08:53:12 2019 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4b745c04 |
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|
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sci-libs/scikits_learn: Remove old |
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|
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Package-Manager: Portage-2.3.83, Repoman-2.3.20 |
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Signed-off-by: David Seifert <soap <AT> gentoo.org> |
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|
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sci-libs/scikits_learn/Manifest | 4 - |
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.../files/scikits_learn-0.14.1-system-cblas.patch | 28 ----- |
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.../files/scikits_learn-0.17.1-system-cblas.patch | 30 ----- |
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sci-libs/scikits_learn/scikits_learn-0.17.1.ebuild | 117 ------------------- |
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sci-libs/scikits_learn/scikits_learn-0.17.ebuild | 117 ------------------- |
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sci-libs/scikits_learn/scikits_learn-0.18.1.ebuild | 120 -------------------- |
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.../scikits_learn/scikits_learn-0.18.2-r1.ebuild | 124 --------------------- |
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sci-libs/scikits_learn/scikits_learn-0.18.2.ebuild | 120 -------------------- |
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sci-libs/scikits_learn/scikits_learn-0.19.0.ebuild | 107 ------------------ |
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9 files changed, 767 deletions(-) |
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|
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diff --git a/sci-libs/scikits_learn/Manifest b/sci-libs/scikits_learn/Manifest |
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index af427e21cc5..cc6598f1275 100644 |
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--- a/sci-libs/scikits_learn/Manifest |
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+++ b/sci-libs/scikits_learn/Manifest |
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@@ -1,5 +1 @@ |
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-DIST scikit-learn-0.17.1.tar.gz 7898571 BLAKE2B 4125864e8701e072e45f83be504a0eba8480f2c08584a6e98f2ae09dd4d64487931eca2ae116230b0d8945822d6e07cc2102129f48e789825c2b70102121fa06 SHA512 5786e04a13225d2433103f1873f2753e332704b98c4c32b840970f763ec1abf0248007089e5ae47e11c66535f05a0d0402715622e6d6f0955ec7961b92e1b2e5 |
30 |
-DIST scikit-learn-0.17.tar.gz 7834903 BLAKE2B 9492a0deff723bd1ff3a976f080a5db0d1bf590521a324d627b09bbb755dbdccc6e41fe71519e10bbad8d425b6b12ff6f44b0518d501d9d075dfa5d021be64dd SHA512 53a76e2f90e27967bf216cd9d7e8051ed847a3381e3b7b7b8236511b4105eef41bd4d3c9f7f71a51db4b0bf99cbd571d7c1b26803757cff04424b70cb834b555 |
31 |
-DIST scikit-learn-0.18.1.tar.gz 8933930 BLAKE2B 48cfc73769531242d1228f41115a78e4649c52e7d8796e54286f996ddab72353e3f73bf22302535b7d24f55194e893ed681c74dd60beab5f8ba09aa3af8e161a SHA512 7149e683424351a28c19501302ece147cb03d4d12b08822eb2b1898a4978b96803323778fbba628008dd7a7c85daea4e9b550a71ee76851f9a09b2baac18a799 |
32 |
-DIST scikit-learn-0.18.2.tar.gz 9224516 BLAKE2B fe4b402e3ac561f9272a0a51ddc17092f2a9fada3e2dc081be3fe66bb7932e0ca0c14d9be21272c364d13c4d9669e9ff399e16b53b5cbaa3f5b20e43d2bb448d SHA512 7c5c7bdd577ad215790654ce1eff6e802aebe53283ab6c5f12684cf99aeecc8976f9a9803f619f549d4d03be0d7634f249046e4b4f15afa12aecb2697e2e0b05 |
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DIST scikit-learn-0.19.0.tar.gz 9341628 BLAKE2B c9e0c12558e81efb6f5cfddead028980b0019d2f6d0fdce5662c9138ec3a5b2a3d30b022a5713578bc7effd09894006e8f7f60a3e038ca66297502d9d4212686 SHA512 1b88bc043b08de9b5bb1f3814b8101c73ced010cf94bd725fb69e1ef95b4a9597a34de4a19f84fbbf63e54d47e95b3ff498d611234fcdfcaa5e4e3cf696289d2 |
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|
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diff --git a/sci-libs/scikits_learn/files/scikits_learn-0.14.1-system-cblas.patch b/sci-libs/scikits_learn/files/scikits_learn-0.14.1-system-cblas.patch |
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deleted file mode 100644 |
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index 96c6cc2dbde..00000000000 |
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--- a/sci-libs/scikits_learn/files/scikits_learn-0.14.1-system-cblas.patch |
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+++ /dev/null |
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@@ -1,28 +0,0 @@ |
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---- sklearn/setup.py.orig 2013-08-08 13:54:08.310879167 -0700 |
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-+++ sklearn/setup.py 2013-08-08 13:52:59.808456423 -0700 |
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-@@ -68,14 +68,6 @@ |
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- libraries=libraries, |
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- ) |
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- |
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-- # some libs needs cblas, fortran-compiled BLAS will not be sufficient |
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-- blas_info = get_info('blas_opt', 0) |
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-- if (not blas_info) or ( |
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-- ('NO_ATLAS_INFO', 1) in blas_info.get('define_macros', [])): |
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-- config.add_library('cblas', |
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-- sources=[join('src', 'cblas', '*.c')]) |
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-- warnings.warn(BlasNotFoundError.__doc__) |
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-- |
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- # the following packages depend on cblas, so they have to be build |
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- # after the above. |
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- config.add_subpackage('linear_model') |
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---- sklearn/_build_utils.py.orig 2013-08-08 14:01:35.994589269 -0700 |
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-+++ sklearn/_build_utils.py 2013-08-08 12:19:41.875967870 -0700 |
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-@@ -23,7 +23,7 @@ |
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- return False |
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- |
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- blas_info = get_info('blas_opt', 0) |
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-- if (not blas_info) or atlas_not_found(blas_info): |
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-+ if (not blas_info): |
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- cblas_libs = ['cblas'] |
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- blas_info.pop('libraries', None) |
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- else: |
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|
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diff --git a/sci-libs/scikits_learn/files/scikits_learn-0.17.1-system-cblas.patch b/sci-libs/scikits_learn/files/scikits_learn-0.17.1-system-cblas.patch |
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deleted file mode 100644 |
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index 42657a7adac..00000000000 |
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--- a/sci-libs/scikits_learn/files/scikits_learn-0.17.1-system-cblas.patch |
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+++ /dev/null |
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@@ -1,30 +0,0 @@ |
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-diff -Nur scikit-learn-0.17.1.orig/sklearn/_build_utils.py scikit-learn-0.17.1/sklearn/_build_utils.py |
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---- scikit-learn-0.17.1.orig/sklearn/_build_utils.py 2016-03-09 00:27:54.756813784 +0000 |
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-+++ scikit-learn-0.17.1/sklearn/_build_utils.py 2016-03-09 00:30:09.605118512 +0000 |
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-@@ -23,7 +23,7 @@ |
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- return False |
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- |
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- blas_info = get_info('blas_opt', 0) |
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-- if (not blas_info) or atlas_not_found(blas_info): |
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-+ if (not blas_info): |
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- cblas_libs = ['cblas'] |
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- blas_info.pop('libraries', None) |
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- else: |
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-diff -Nur scikit-learn-0.17.1.orig/sklearn/setup.py scikit-learn-0.17.1/sklearn/setup.py |
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---- scikit-learn-0.17.1.orig/sklearn/setup.py 2016-03-09 00:27:54.806813156 +0000 |
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-+++ scikit-learn-0.17.1/sklearn/setup.py 2016-03-09 00:29:28.215638848 +0000 |
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-@@ -58,14 +58,6 @@ |
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- libraries=libraries, |
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- ) |
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- |
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-- # some libs needs cblas, fortran-compiled BLAS will not be sufficient |
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-- blas_info = get_info('blas_opt', 0) |
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-- if (not blas_info) or ( |
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-- ('NO_ATLAS_INFO', 1) in blas_info.get('define_macros', [])): |
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-- config.add_library('cblas', |
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-- sources=[join('src', 'cblas', '*.c')]) |
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-- warnings.warn(BlasNotFoundError.__doc__) |
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-- |
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- # the following packages depend on cblas, so they have to be build |
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- # after the above. |
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- config.add_subpackage('linear_model') |
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|
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diff --git a/sci-libs/scikits_learn/scikits_learn-0.17.1.ebuild b/sci-libs/scikits_learn/scikits_learn-0.17.1.ebuild |
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deleted file mode 100644 |
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index e83910a436b..00000000000 |
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--- a/sci-libs/scikits_learn/scikits_learn-0.17.1.ebuild |
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+++ /dev/null |
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@@ -1,117 +0,0 @@ |
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-# Copyright 1999-2019 Gentoo Authors |
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-# Distributed under the terms of the GNU General Public License v2 |
115 |
- |
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-EAPI=6 |
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- |
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-PYTHON_COMPAT=( python2_7 python3_5 ) |
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- |
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-inherit distutils-r1 flag-o-matic |
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- |
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-MYPN="${PN/scikits_/scikit-}" |
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-MYP="${MYPN}-${PV}" |
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- |
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-DESCRIPTION="Python modules for machine learning and data mining" |
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-HOMEPAGE="https://scikit-learn.org" |
127 |
-SRC_URI="mirror://pypi/${MYPN:0:1}/${MYPN}/${MYP}.tar.gz" |
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- |
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-LICENSE="BSD" |
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-SLOT="0" |
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-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
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-IUSE="doc examples test" |
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-RESTRICT="!test? ( test )" |
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- |
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-RDEPEND=" |
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- dev-python/joblib[${PYTHON_USEDEP}] |
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- dev-python/matplotlib[${PYTHON_USEDEP}] |
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- dev-python/nose[${PYTHON_USEDEP}] |
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- >=dev-python/numpy-1.6.1[lapack,${PYTHON_USEDEP}] |
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- sci-libs/scikits[${PYTHON_USEDEP}] |
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- >=sci-libs/scipy-0.9[${PYTHON_USEDEP}] |
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- virtual/blas |
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- virtual/cblas |
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- virtual/python-funcsigs[${PYTHON_USEDEP}] |
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- " |
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-DEPEND=" |
147 |
- dev-python/cython[${PYTHON_USEDEP}] |
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- dev-python/numpy[lapack,${PYTHON_USEDEP}] |
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- dev-python/setuptools[${PYTHON_USEDEP}] |
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- sci-libs/scipy[${PYTHON_USEDEP}] |
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- virtual/blas |
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- virtual/cblas |
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- doc? ( |
154 |
- dev-python/joblib[${PYTHON_USEDEP}] |
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- dev-python/matplotlib[${PYTHON_USEDEP}] |
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- dev-python/sphinx[${PYTHON_USEDEP}] |
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- )" |
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- |
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-S="${WORKDIR}/${MYP}" |
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- |
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-PATCHES=( "${FILESDIR}/${P}-system-cblas.patch" ) |
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- |
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-python_prepare_all() { |
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- # bug #397605 |
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- [[ ${CHOST} == *-darwin* ]] \ |
166 |
- && append-ldflags -bundle "-undefined dynamic_lookup" \ |
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- || append-ldflags -shared |
168 |
- |
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- # scikits-learn now uses the horrible numpy.distutils automagic |
170 |
- export SCIPY_FCONFIG="config_fc --noopt --noarch" |
171 |
- |
172 |
- # use system joblib |
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- rm -r sklearn/externals/joblib/* || die |
174 |
- echo "from joblib import *" > sklearn/externals/joblib/__init__.py |
175 |
- sed -i -e '/joblib\/test/d' sklearn/externals/setup.py || die |
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- sed -i -e 's/..externals.joblib/ joblib/g' \ |
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- sklearn/cross_validation.py \ |
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- sklearn/decomposition/tests/test_sparse_pca.py \ |
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- sklearn/metrics/pairwise.py || die |
180 |
- |
181 |
- rm sklearn/externals/funcsigs.py || die |
182 |
- rm sklearn/externals/odict.py || die |
183 |
- sed -e 's:from ..externals.funcsigs import signature:from funcsigs import signature:g' \ |
184 |
- -i sklearn/utils/fixes.py || die |
185 |
- |
186 |
- distutils-r1_python_prepare_all |
187 |
-} |
188 |
- |
189 |
-python_compile() { |
190 |
- distutils-r1_python_compile ${SCIPY_FCONFIG} |
191 |
-} |
192 |
- |
193 |
-python_compile_all() { |
194 |
- if use doc; then |
195 |
- cd "${S}/doc" || die |
196 |
- local d="${BUILD_DIR}"/lib |
197 |
- ln -s "${S}"/sklearn/datasets/{data,descr,images} \ |
198 |
- "${d}"/sklearn/datasets || die |
199 |
- VARTEXFONTS="${T}"/fonts \ |
200 |
- MPLCONFIGDIR="${BUILD_DIR}" \ |
201 |
- PYTHONPATH="${d}" \ |
202 |
- emake html |
203 |
- rm -r "${d}"/sklearn/datasets/{data,descr,images} || die |
204 |
- fi |
205 |
-} |
206 |
- |
207 |
-python_test() { |
208 |
- # doc builds and runs tests |
209 |
- use doc && return |
210 |
- distutils_install_for_testing ${SCIPY_FCONFIG} |
211 |
- esetup.py \ |
212 |
- install --root="${T}/test-${EPYTHON}" \ |
213 |
- --no-compile ${SCIPY_FCONFIG} |
214 |
- pushd "${T}/test-${EPYTHON}/$(python_get_sitedir)" || die > /dev/null |
215 |
- nosetests -v sklearn --exe || die |
216 |
- popd > /dev/null |
217 |
-} |
218 |
- |
219 |
-python_install() { |
220 |
- distutils-r1_python_install ${SCIPY_FCONFIG} |
221 |
-} |
222 |
- |
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-python_install_all() { |
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- find "${S}" -name \*LICENSE.txt -delete |
225 |
- insinto /usr/share/doc/${PF} |
226 |
- use doc && doins -r doc/_build/html |
227 |
- use examples && doins -r examples |
228 |
- distutils-r1_python_install_all |
229 |
-} |
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|
231 |
diff --git a/sci-libs/scikits_learn/scikits_learn-0.17.ebuild b/sci-libs/scikits_learn/scikits_learn-0.17.ebuild |
232 |
deleted file mode 100644 |
233 |
index e8b01caac0b..00000000000 |
234 |
--- a/sci-libs/scikits_learn/scikits_learn-0.17.ebuild |
235 |
+++ /dev/null |
236 |
@@ -1,117 +0,0 @@ |
237 |
-# Copyright 1999-2019 Gentoo Authors |
238 |
-# Distributed under the terms of the GNU General Public License v2 |
239 |
- |
240 |
-EAPI=5 |
241 |
- |
242 |
-PYTHON_COMPAT=( python2_7 ) |
243 |
- |
244 |
-inherit distutils-r1 eutils multilib flag-o-matic |
245 |
- |
246 |
-MYPN="${PN/scikits_/scikit-}" |
247 |
-MYP="${MYPN}-${PV}" |
248 |
- |
249 |
-DESCRIPTION="Python modules for machine learning and data mining" |
250 |
-HOMEPAGE="https://scikit-learn.org" |
251 |
-SRC_URI="mirror://pypi/${MYPN:0:1}/${MYPN}/${MYP}.tar.gz" |
252 |
- |
253 |
-LICENSE="BSD" |
254 |
-SLOT="0" |
255 |
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
256 |
-IUSE="doc examples test" |
257 |
-RESTRICT="!test? ( test )" |
258 |
- |
259 |
-RDEPEND=" |
260 |
- dev-python/joblib[${PYTHON_USEDEP}] |
261 |
- dev-python/matplotlib[${PYTHON_USEDEP}] |
262 |
- dev-python/nose[${PYTHON_USEDEP}] |
263 |
- >=dev-python/numpy-1.6.1[lapack,${PYTHON_USEDEP}] |
264 |
- sci-libs/scikits[${PYTHON_USEDEP}] |
265 |
- >=sci-libs/scipy-0.9[${PYTHON_USEDEP}] |
266 |
- virtual/blas |
267 |
- virtual/cblas |
268 |
- virtual/python-funcsigs[${PYTHON_USEDEP}] |
269 |
- " |
270 |
-DEPEND=" |
271 |
- dev-python/cython[${PYTHON_USEDEP}] |
272 |
- dev-python/numpy[lapack,${PYTHON_USEDEP}] |
273 |
- dev-python/setuptools[${PYTHON_USEDEP}] |
274 |
- sci-libs/scipy[${PYTHON_USEDEP}] |
275 |
- virtual/blas |
276 |
- virtual/cblas |
277 |
- doc? ( |
278 |
- dev-python/joblib[${PYTHON_USEDEP}] |
279 |
- dev-python/matplotlib[${PYTHON_USEDEP}] |
280 |
- dev-python/sphinx[${PYTHON_USEDEP}] |
281 |
- )" |
282 |
- |
283 |
-S="${WORKDIR}/${MYP}" |
284 |
- |
285 |
-python_prepare_all() { |
286 |
- # bug #397605 |
287 |
- [[ ${CHOST} == *-darwin* ]] \ |
288 |
- && append-ldflags -bundle "-undefined dynamic_lookup" \ |
289 |
- || append-ldflags -shared |
290 |
- |
291 |
- # scikits-learn now uses the horrible numpy.distutils automagic |
292 |
- export SCIPY_FCONFIG="config_fc --noopt --noarch" |
293 |
- |
294 |
- # use system joblib |
295 |
- rm -r sklearn/externals/joblib/* || die |
296 |
- echo "from joblib import *" > sklearn/externals/joblib/__init__.py |
297 |
- sed -i -e '/joblib\/test/d' sklearn/externals/setup.py || die |
298 |
- sed -i -e 's/..externals.joblib/joblib/g' \ |
299 |
- sklearn/decomposition/tests/test_sparse_pca.py \ |
300 |
- sklearn/metrics/pairwise.py || die |
301 |
- |
302 |
- rm sklearn/externals/funcsigs.py || die |
303 |
- rm sklearn/externals/odict.py || die |
304 |
- sed \ |
305 |
- -e 's:from ..externals.funcsigs import signature:from funcsigs import signature:g' \ |
306 |
- -i sklearn/utils/fixes.py || die |
307 |
- |
308 |
- # use gentoo cblas infrastructure |
309 |
- epatch "${FILESDIR}"/${PN}-0.14.1-system-cblas.patch |
310 |
- |
311 |
- distutils-r1_python_prepare_all |
312 |
-} |
313 |
- |
314 |
-python_compile() { |
315 |
- distutils-r1_python_compile ${SCIPY_FCONFIG} |
316 |
-} |
317 |
- |
318 |
-python_compile_all() { |
319 |
- if use doc; then |
320 |
- cd "${S}/doc" || die |
321 |
- local d="${BUILD_DIR}"/lib |
322 |
- ln -s "${S}"/sklearn/datasets/{data,descr,images} \ |
323 |
- "${d}"/sklearn/datasets || die |
324 |
- VARTEXFONTS="${T}"/fonts \ |
325 |
- MPLCONFIGDIR="${BUILD_DIR}" \ |
326 |
- PYTHONPATH="${d}" \ |
327 |
- emake html |
328 |
- rm -r "${d}"/sklearn/datasets/{data,descr,images} || die |
329 |
- fi |
330 |
-} |
331 |
- |
332 |
-python_test() { |
333 |
- # doc builds and runs tests |
334 |
- use doc && return |
335 |
- distutils_install_for_testing ${SCIPY_FCONFIG} |
336 |
- esetup.py \ |
337 |
- install --root="${T}/test-${EPYTHON}" \ |
338 |
- --no-compile ${SCIPY_FCONFIG} |
339 |
- pushd "${T}/test-${EPYTHON}/$(python_get_sitedir)" || die > /dev/null |
340 |
- nosetests -v sklearn --exe || die |
341 |
- popd > /dev/null |
342 |
-} |
343 |
- |
344 |
-python_install() { |
345 |
- distutils-r1_python_install ${SCIPY_FCONFIG} |
346 |
-} |
347 |
- |
348 |
-python_install_all() { |
349 |
- find "${S}" -name \*LICENSE.txt -delete |
350 |
- use doc && HTML_DOCS=( doc/_build/html/. ) |
351 |
- use examples && EXAMPLES=( examples/. ) |
352 |
- distutils-r1_python_install_all |
353 |
-} |
354 |
|
355 |
diff --git a/sci-libs/scikits_learn/scikits_learn-0.18.1.ebuild b/sci-libs/scikits_learn/scikits_learn-0.18.1.ebuild |
356 |
deleted file mode 100644 |
357 |
index 1a04525ec15..00000000000 |
358 |
--- a/sci-libs/scikits_learn/scikits_learn-0.18.1.ebuild |
359 |
+++ /dev/null |
360 |
@@ -1,120 +0,0 @@ |
361 |
-# Copyright 1999-2019 Gentoo Authors |
362 |
-# Distributed under the terms of the GNU General Public License v2 |
363 |
- |
364 |
-EAPI=6 |
365 |
- |
366 |
-PYTHON_COMPAT=( python2_7 python3_5 ) |
367 |
- |
368 |
-inherit distutils-r1 flag-o-matic |
369 |
- |
370 |
-MYPN="${PN/scikits_/scikit-}" |
371 |
-MYP="${MYPN}-${PV}" |
372 |
- |
373 |
-DESCRIPTION="Python modules for machine learning and data mining" |
374 |
-HOMEPAGE="https://scikit-learn.org" |
375 |
-SRC_URI="mirror://pypi/${MYPN:0:1}/${MYPN}/${MYP}.tar.gz" |
376 |
- |
377 |
-LICENSE="BSD" |
378 |
-SLOT="0" |
379 |
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
380 |
-IUSE="doc examples test" |
381 |
-RESTRICT="!test? ( test )" |
382 |
- |
383 |
-RDEPEND=" |
384 |
- dev-python/joblib[${PYTHON_USEDEP}] |
385 |
- dev-python/matplotlib[${PYTHON_USEDEP}] |
386 |
- dev-python/nose[${PYTHON_USEDEP}] |
387 |
- >=dev-python/numpy-1.6.1[lapack,${PYTHON_USEDEP}] |
388 |
- sci-libs/scikits[${PYTHON_USEDEP}] |
389 |
- >=sci-libs/scipy-0.9[${PYTHON_USEDEP}] |
390 |
- virtual/blas |
391 |
- virtual/cblas |
392 |
- virtual/python-funcsigs[${PYTHON_USEDEP}] |
393 |
- " |
394 |
-DEPEND=" |
395 |
- dev-python/cython[${PYTHON_USEDEP}] |
396 |
- dev-python/numpy[lapack,${PYTHON_USEDEP}] |
397 |
- dev-python/setuptools[${PYTHON_USEDEP}] |
398 |
- sci-libs/scipy[${PYTHON_USEDEP}] |
399 |
- virtual/blas |
400 |
- virtual/cblas |
401 |
- doc? ( |
402 |
- dev-python/joblib[${PYTHON_USEDEP}] |
403 |
- dev-python/matplotlib[${PYTHON_USEDEP}] |
404 |
- dev-python/sphinx[${PYTHON_USEDEP}] |
405 |
- )" |
406 |
- |
407 |
-S="${WORKDIR}/${MYP}" |
408 |
- |
409 |
-PATCHES=( "${FILESDIR}/${P}-system-cblas.patch" ) |
410 |
- |
411 |
-python_prepare_all() { |
412 |
- # bug #397605 |
413 |
- [[ ${CHOST} == *-darwin* ]] \ |
414 |
- && append-ldflags -bundle "-undefined dynamic_lookup" \ |
415 |
- || append-ldflags -shared |
416 |
- |
417 |
- # scikits-learn now uses the horrible numpy.distutils automagic |
418 |
- export SCIPY_FCONFIG="config_fc --noopt --noarch" |
419 |
- |
420 |
- # remove bundled cblas |
421 |
- rm -r sklearn/src || die |
422 |
- |
423 |
- # use system joblib |
424 |
- rm -r sklearn/externals/joblib || die |
425 |
- sed -i -e '/joblib/d' sklearn/externals/setup.py || die |
426 |
- for f in sklearn/{*/,}*.py; do |
427 |
- sed -r -e '/^from/s/(sklearn|\.|)\.externals\.joblib/joblib/' \ |
428 |
- -e 's/from (sklearn|\.|)\.externals import/import/' -i $f || die |
429 |
- done |
430 |
- |
431 |
- rm sklearn/externals/funcsigs.py || die |
432 |
- rm sklearn/externals/odict.py || die |
433 |
- for f in sklearn/{utils/fixes.py,gaussian_process/{tests/test_,}kernels.py}; do |
434 |
- sed -r -e 's/from (sklearn|\.|)\.externals\.funcsigs/from funcsigs/' -i $f || die |
435 |
- done |
436 |
- |
437 |
- distutils-r1_python_prepare_all |
438 |
-} |
439 |
- |
440 |
-python_compile() { |
441 |
- distutils-r1_python_compile ${SCIPY_FCONFIG} |
442 |
-} |
443 |
- |
444 |
-python_compile_all() { |
445 |
- if use doc; then |
446 |
- cd "${S}/doc" || die |
447 |
- local d="${BUILD_DIR}"/lib |
448 |
- ln -s "${S}"/sklearn/datasets/{data,descr,images} \ |
449 |
- "${d}"/sklearn/datasets || die |
450 |
- VARTEXFONTS="${T}"/fonts \ |
451 |
- MPLCONFIGDIR="${BUILD_DIR}" \ |
452 |
- PYTHONPATH="${d}" \ |
453 |
- emake html |
454 |
- rm -r "${d}"/sklearn/datasets/{data,descr,images} || die |
455 |
- fi |
456 |
-} |
457 |
- |
458 |
-python_test() { |
459 |
- # doc builds and runs tests |
460 |
- use doc && return |
461 |
- distutils_install_for_testing ${SCIPY_FCONFIG} |
462 |
- esetup.py \ |
463 |
- install --root="${T}/test-${EPYTHON}" \ |
464 |
- --no-compile ${SCIPY_FCONFIG} |
465 |
- pushd "${T}/test-${EPYTHON}/$(python_get_sitedir)" || die > /dev/null |
466 |
- nosetests -v sklearn --exe || die |
467 |
- popd > /dev/null |
468 |
-} |
469 |
- |
470 |
-python_install() { |
471 |
- distutils-r1_python_install ${SCIPY_FCONFIG} |
472 |
-} |
473 |
- |
474 |
-python_install_all() { |
475 |
- find "${S}" -name \*LICENSE.txt -delete |
476 |
- insinto /usr/share/doc/${PF} |
477 |
- use doc && doins -r doc/_build/html |
478 |
- use examples && doins -r examples |
479 |
- distutils-r1_python_install_all |
480 |
-} |
481 |
|
482 |
diff --git a/sci-libs/scikits_learn/scikits_learn-0.18.2-r1.ebuild b/sci-libs/scikits_learn/scikits_learn-0.18.2-r1.ebuild |
483 |
deleted file mode 100644 |
484 |
index 854f19af4e3..00000000000 |
485 |
--- a/sci-libs/scikits_learn/scikits_learn-0.18.2-r1.ebuild |
486 |
+++ /dev/null |
487 |
@@ -1,124 +0,0 @@ |
488 |
-# Copyright 1999-2019 Gentoo Authors |
489 |
-# Distributed under the terms of the GNU General Public License v2 |
490 |
- |
491 |
-EAPI=6 |
492 |
- |
493 |
-PYTHON_COMPAT=( python2_7 python3_{5,6} ) |
494 |
- |
495 |
-inherit distutils-r1 flag-o-matic |
496 |
- |
497 |
-MYPN="${PN/scikits_/scikit-}" |
498 |
-MYP="${MYPN}-${PV}" |
499 |
- |
500 |
-DESCRIPTION="Python modules for machine learning and data mining" |
501 |
-HOMEPAGE="https://scikit-learn.org" |
502 |
-SRC_URI="mirror://pypi/${MYPN:0:1}/${MYPN}/${MYP}.tar.gz" |
503 |
- |
504 |
-LICENSE="BSD" |
505 |
-SLOT="0" |
506 |
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
507 |
-IUSE="doc examples test" |
508 |
-RESTRICT="!test? ( test )" |
509 |
- |
510 |
-# tried to unbundle virtual/python-funcsigs, funcsigs, odict |
511 |
-# but it is a large mess to maintain |
512 |
- |
513 |
-RDEPEND=" |
514 |
- dev-python/matplotlib[${PYTHON_USEDEP}] |
515 |
- dev-python/nose[${PYTHON_USEDEP}] |
516 |
- dev-python/numpy[lapack,${PYTHON_USEDEP}] |
517 |
- sci-libs/scikits[${PYTHON_USEDEP}] |
518 |
- sci-libs/scipy[${PYTHON_USEDEP}] |
519 |
- virtual/blas:= |
520 |
- virtual/cblas:= |
521 |
-" |
522 |
- |
523 |
-DEPEND=" |
524 |
- dev-python/cython[${PYTHON_USEDEP}] |
525 |
- dev-python/numpy[lapack,${PYTHON_USEDEP}] |
526 |
- dev-python/setuptools[${PYTHON_USEDEP}] |
527 |
- sci-libs/scipy[${PYTHON_USEDEP}] |
528 |
- virtual/blas:= |
529 |
- virtual/cblas:= |
530 |
- doc? ( |
531 |
- dev-python/matplotlib[${PYTHON_USEDEP}] |
532 |
- dev-python/sphinx[${PYTHON_USEDEP}] |
533 |
- ) |
534 |
-" |
535 |
- |
536 |
-S="${WORKDIR}/${MYP}" |
537 |
- |
538 |
-PATCHES=( "${FILESDIR}/${PN}-0.18.1-system-cblas.patch" ) |
539 |
- |
540 |
-python_prepare_all() { |
541 |
- # bug #397605 |
542 |
- [[ ${CHOST} == *-darwin* ]] \ |
543 |
- && append-ldflags -bundle "-undefined dynamic_lookup" \ |
544 |
- || append-ldflags -shared |
545 |
- |
546 |
- # scikits-learn now uses the horrible numpy.distutils automagic |
547 |
- export SCIPY_FCONFIG="config_fc --noopt --noarch" |
548 |
- |
549 |
- # remove bundled cblas |
550 |
- rm -r sklearn/src || die |
551 |
- |
552 |
- # commented out, since it is a mess to maintain |
553 |
- # use system joblib |
554 |
- #rm -r sklearn/externals/joblib || die |
555 |
- #sed -i -e '/joblib/d' sklearn/externals/setup.py || die |
556 |
- #for f in sklearn/{*/,}*.py; do |
557 |
- # sed -r -e '/^from/s/(sklearn|\.|)\.externals\.joblib/joblib/' \ |
558 |
- # -e 's/from (sklearn|\.|)\.externals import/import/' -i $f || die |
559 |
- #done |
560 |
- |
561 |
- # use system funcsigs and odict |
562 |
- #rm sklearn/externals/funcsigs.py || die |
563 |
- #rm sklearn/externals/odict.py || die |
564 |
- #for f in sklearn/{utils/fixes.py,gaussian_process/{tests/test_,}kernels.py}; do |
565 |
- # sed -r -e 's/from (sklearn|\.|)\.externals\.funcsigs/from funcsigs/' -i $f || die |
566 |
- #done |
567 |
- distutils-r1_python_prepare_all |
568 |
-} |
569 |
- |
570 |
-python_compile() { |
571 |
- distutils-r1_python_compile ${SCIPY_FCONFIG} |
572 |
-} |
573 |
- |
574 |
-python_compile_all() { |
575 |
- if use doc; then |
576 |
- cd "${S}/doc" || die |
577 |
- local d="${BUILD_DIR}/lib" |
578 |
- ln -s \ |
579 |
- "${S}"/sklearn/datasets/{data,descr,images} \ |
580 |
- "${d}"/sklearn/datasets || die |
581 |
- VARTEXFONTS="${T}"/fonts \ |
582 |
- MPLCONFIGDIR="${BUILD_DIR}" \ |
583 |
- PYTHONPATH="${d}" \ |
584 |
- emake html |
585 |
- rm -r "${d}"/sklearn/datasets/{data,descr,images} || die |
586 |
- fi |
587 |
-} |
588 |
- |
589 |
-python_test() { |
590 |
- # doc builds and runs tests |
591 |
- use doc && return |
592 |
- distutils_install_for_testing ${SCIPY_FCONFIG} |
593 |
- esetup.py install \ |
594 |
- --root="${T}/test-${EPYTHON}" \ |
595 |
- --no-compile ${SCIPY_FCONFIG} |
596 |
- pushd "${T}/test-${EPYTHON}/$(python_get_sitedir)" || die > /dev/null |
597 |
- JOBLIB_MULTIPROCESSING=2 SKLEARN_SKIP_NETWORK_TESTS=1 nosetests -v sklearn --exe || die |
598 |
- popd > /dev/null |
599 |
-} |
600 |
- |
601 |
-python_install() { |
602 |
- distutils-r1_python_install ${SCIPY_FCONFIG} |
603 |
-} |
604 |
- |
605 |
-python_install_all() { |
606 |
- find "${S}" -name \*LICENSE.txt -delete |
607 |
- insinto /usr/share/doc/${PF} |
608 |
- use doc && doins -r doc/_build/html |
609 |
- use examples && doins -r examples |
610 |
- distutils-r1_python_install_all |
611 |
-} |
612 |
|
613 |
diff --git a/sci-libs/scikits_learn/scikits_learn-0.18.2.ebuild b/sci-libs/scikits_learn/scikits_learn-0.18.2.ebuild |
614 |
deleted file mode 100644 |
615 |
index 191789ac6c0..00000000000 |
616 |
--- a/sci-libs/scikits_learn/scikits_learn-0.18.2.ebuild |
617 |
+++ /dev/null |
618 |
@@ -1,120 +0,0 @@ |
619 |
-# Copyright 1999-2019 Gentoo Authors |
620 |
-# Distributed under the terms of the GNU General Public License v2 |
621 |
- |
622 |
-EAPI=6 |
623 |
- |
624 |
-PYTHON_COMPAT=( python2_7 python3_{5,6} ) |
625 |
- |
626 |
-inherit distutils-r1 flag-o-matic |
627 |
- |
628 |
-MYPN="${PN/scikits_/scikit-}" |
629 |
-MYP="${MYPN}-${PV}" |
630 |
- |
631 |
-DESCRIPTION="Python modules for machine learning and data mining" |
632 |
-HOMEPAGE="https://scikit-learn.org" |
633 |
-SRC_URI="mirror://pypi/${MYPN:0:1}/${MYPN}/${MYP}.tar.gz" |
634 |
- |
635 |
-LICENSE="BSD" |
636 |
-SLOT="0" |
637 |
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
638 |
-IUSE="doc examples test" |
639 |
-RESTRICT="!test? ( test )" |
640 |
- |
641 |
-RDEPEND=" |
642 |
- dev-python/joblib[${PYTHON_USEDEP}] |
643 |
- dev-python/matplotlib[${PYTHON_USEDEP}] |
644 |
- dev-python/nose[${PYTHON_USEDEP}] |
645 |
- >=dev-python/numpy-1.6.1[lapack,${PYTHON_USEDEP}] |
646 |
- sci-libs/scikits[${PYTHON_USEDEP}] |
647 |
- >=sci-libs/scipy-0.9[${PYTHON_USEDEP}] |
648 |
- virtual/blas |
649 |
- virtual/cblas |
650 |
- virtual/python-funcsigs[${PYTHON_USEDEP}] |
651 |
- " |
652 |
-DEPEND=" |
653 |
- dev-python/cython[${PYTHON_USEDEP}] |
654 |
- dev-python/numpy[lapack,${PYTHON_USEDEP}] |
655 |
- dev-python/setuptools[${PYTHON_USEDEP}] |
656 |
- sci-libs/scipy[${PYTHON_USEDEP}] |
657 |
- virtual/blas |
658 |
- virtual/cblas |
659 |
- doc? ( |
660 |
- dev-python/joblib[${PYTHON_USEDEP}] |
661 |
- dev-python/matplotlib[${PYTHON_USEDEP}] |
662 |
- dev-python/sphinx[${PYTHON_USEDEP}] |
663 |
- )" |
664 |
- |
665 |
-S="${WORKDIR}/${MYP}" |
666 |
- |
667 |
-PATCHES=( "${FILESDIR}/${PN}-0.18.1-system-cblas.patch" ) |
668 |
- |
669 |
-python_prepare_all() { |
670 |
- # bug #397605 |
671 |
- [[ ${CHOST} == *-darwin* ]] \ |
672 |
- && append-ldflags -bundle "-undefined dynamic_lookup" \ |
673 |
- || append-ldflags -shared |
674 |
- |
675 |
- # scikits-learn now uses the horrible numpy.distutils automagic |
676 |
- export SCIPY_FCONFIG="config_fc --noopt --noarch" |
677 |
- |
678 |
- # remove bundled cblas |
679 |
- rm -r sklearn/src || die |
680 |
- |
681 |
- # use system joblib |
682 |
- rm -r sklearn/externals/joblib || die |
683 |
- sed -i -e '/joblib/d' sklearn/externals/setup.py || die |
684 |
- for f in sklearn/{*/,}*.py; do |
685 |
- sed -r -e '/^from/s/(sklearn|\.|)\.externals\.joblib/joblib/' \ |
686 |
- -e 's/from (sklearn|\.|)\.externals import/import/' -i $f || die |
687 |
- done |
688 |
- |
689 |
- rm sklearn/externals/funcsigs.py || die |
690 |
- rm sklearn/externals/odict.py || die |
691 |
- for f in sklearn/{utils/fixes.py,gaussian_process/{tests/test_,}kernels.py}; do |
692 |
- sed -r -e 's/from (sklearn|\.|)\.externals\.funcsigs/from funcsigs/' -i $f || die |
693 |
- done |
694 |
- |
695 |
- distutils-r1_python_prepare_all |
696 |
-} |
697 |
- |
698 |
-python_compile() { |
699 |
- distutils-r1_python_compile ${SCIPY_FCONFIG} |
700 |
-} |
701 |
- |
702 |
-python_compile_all() { |
703 |
- if use doc; then |
704 |
- cd "${S}/doc" || die |
705 |
- local d="${BUILD_DIR}"/lib |
706 |
- ln -s "${S}"/sklearn/datasets/{data,descr,images} \ |
707 |
- "${d}"/sklearn/datasets || die |
708 |
- VARTEXFONTS="${T}"/fonts \ |
709 |
- MPLCONFIGDIR="${BUILD_DIR}" \ |
710 |
- PYTHONPATH="${d}" \ |
711 |
- emake html |
712 |
- rm -r "${d}"/sklearn/datasets/{data,descr,images} || die |
713 |
- fi |
714 |
-} |
715 |
- |
716 |
-python_test() { |
717 |
- # doc builds and runs tests |
718 |
- use doc && return |
719 |
- distutils_install_for_testing ${SCIPY_FCONFIG} |
720 |
- esetup.py \ |
721 |
- install --root="${T}/test-${EPYTHON}" \ |
722 |
- --no-compile ${SCIPY_FCONFIG} |
723 |
- pushd "${T}/test-${EPYTHON}/$(python_get_sitedir)" || die > /dev/null |
724 |
- nosetests -v sklearn --exe || die |
725 |
- popd > /dev/null |
726 |
-} |
727 |
- |
728 |
-python_install() { |
729 |
- distutils-r1_python_install ${SCIPY_FCONFIG} |
730 |
-} |
731 |
- |
732 |
-python_install_all() { |
733 |
- find "${S}" -name \*LICENSE.txt -delete |
734 |
- insinto /usr/share/doc/${PF} |
735 |
- use doc && doins -r doc/_build/html |
736 |
- use examples && doins -r examples |
737 |
- distutils-r1_python_install_all |
738 |
-} |
739 |
|
740 |
diff --git a/sci-libs/scikits_learn/scikits_learn-0.19.0.ebuild b/sci-libs/scikits_learn/scikits_learn-0.19.0.ebuild |
741 |
deleted file mode 100644 |
742 |
index f6a48d144c7..00000000000 |
743 |
--- a/sci-libs/scikits_learn/scikits_learn-0.19.0.ebuild |
744 |
+++ /dev/null |
745 |
@@ -1,107 +0,0 @@ |
746 |
-# Copyright 1999-2019 Gentoo Authors |
747 |
-# Distributed under the terms of the GNU General Public License v2 |
748 |
- |
749 |
-EAPI=6 |
750 |
- |
751 |
-PYTHON_COMPAT=( python2_7 python3_{5,6} ) |
752 |
- |
753 |
-inherit distutils-r1 flag-o-matic |
754 |
- |
755 |
-MYPN="${PN/scikits_/scikit-}" |
756 |
-MYP="${MYPN}-${PV}" |
757 |
- |
758 |
-DESCRIPTION="Python modules for machine learning and data mining" |
759 |
-HOMEPAGE="https://scikit-learn.org" |
760 |
-SRC_URI="mirror://pypi/${MYPN:0:1}/${MYPN}/${MYP}.tar.gz" |
761 |
- |
762 |
-LICENSE="BSD" |
763 |
-SLOT="0" |
764 |
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
765 |
-IUSE="examples test" |
766 |
-RESTRICT="!test? ( test )" |
767 |
- |
768 |
-# tried to unbundle virtual/python-funcsigs, funcsigs, odict |
769 |
-# but it is a large mess to maintain |
770 |
- |
771 |
-RDEPEND=" |
772 |
- dev-python/matplotlib[${PYTHON_USEDEP}] |
773 |
- dev-python/nose[${PYTHON_USEDEP}] |
774 |
- dev-python/numpy[lapack,${PYTHON_USEDEP}] |
775 |
- sci-libs/scikits[${PYTHON_USEDEP}] |
776 |
- sci-libs/scipy[${PYTHON_USEDEP}] |
777 |
- virtual/blas:= |
778 |
- virtual/cblas:= |
779 |
-" |
780 |
- |
781 |
-DEPEND=" |
782 |
- dev-python/cython[${PYTHON_USEDEP}] |
783 |
- dev-python/numpy[lapack,${PYTHON_USEDEP}] |
784 |
- dev-python/setuptools[${PYTHON_USEDEP}] |
785 |
- sci-libs/scipy[${PYTHON_USEDEP}] |
786 |
- virtual/blas:= |
787 |
- virtual/cblas:= |
788 |
-" |
789 |
- |
790 |
-S="${WORKDIR}/${MYP}" |
791 |
- |
792 |
-PATCHES=( "${FILESDIR}"/${PN}-0.18.1-system-cblas.patch ) |
793 |
- |
794 |
-python_prepare_all() { |
795 |
- # bug #397605 |
796 |
- [[ ${CHOST} == *-darwin* ]] \ |
797 |
- && append-ldflags -bundle "-undefined dynamic_lookup" \ |
798 |
- || append-ldflags -shared |
799 |
- |
800 |
- # scikits-learn now uses the horrible numpy.distutils automagic |
801 |
- export SCIPY_FCONFIG="config_fc --noopt --noarch" |
802 |
- |
803 |
- # remove bundled cblas |
804 |
- rm -r sklearn/src || die |
805 |
- |
806 |
- # commented out, since it is a mess to maintain |
807 |
- # use system joblib |
808 |
- #rm -r sklearn/externals/joblib || die |
809 |
- #sed -i -e '/joblib/d' sklearn/externals/setup.py || die |
810 |
- #for f in sklearn/{*/,}*.py; do |
811 |
- # sed -r -e '/^from/s/(sklearn|\.|)\.externals\.joblib/joblib/' \ |
812 |
- # -e 's/from (sklearn|\.|)\.externals import/import/' -i $f || die |
813 |
- #done |
814 |
- |
815 |
- # use system funcsigs and odict |
816 |
- #rm sklearn/externals/funcsigs.py || die |
817 |
- #rm sklearn/externals/odict.py || die |
818 |
- #for f in sklearn/{utils/fixes.py,gaussian_process/{tests/test_,}kernels.py}; do |
819 |
- # sed -r -e 's/from (sklearn|\.|)\.externals\.funcsigs/from funcsigs/' -i $f || die |
820 |
- #done |
821 |
- distutils-r1_python_prepare_all |
822 |
-} |
823 |
- |
824 |
-python_compile() { |
825 |
- distutils-r1_python_compile ${SCIPY_FCONFIG} |
826 |
-} |
827 |
- |
828 |
-python_test() { |
829 |
- # doc builds and runs tests |
830 |
- use doc && return |
831 |
- distutils_install_for_testing ${SCIPY_FCONFIG} |
832 |
- esetup.py install \ |
833 |
- --root="${T}/test-${EPYTHON}" \ |
834 |
- --no-compile ${SCIPY_FCONFIG} |
835 |
- pushd "${T}/test-${EPYTHON}/$(python_get_sitedir)" || die > /dev/null |
836 |
- JOBLIB_MULTIPROCESSING=2 SKLEARN_SKIP_NETWORK_TESTS=1 nosetests -v sklearn --exe || die |
837 |
- popd > /dev/null |
838 |
-} |
839 |
- |
840 |
-python_install() { |
841 |
- distutils-r1_python_install ${SCIPY_FCONFIG} |
842 |
-} |
843 |
- |
844 |
-python_install_all() { |
845 |
- find "${S}" -name \*LICENSE.txt -delete |
846 |
- distutils-r1_python_install_all |
847 |
- if use examples; then |
848 |
- dodoc -r examples |
849 |
- docompress -x /usr/share/doc/${PF}/examples |
850 |
- fi |
851 |
- |
852 |
-} |