| 1 |
commit: 09c93bc43d5edf8bbbc90ba765d17a027ecf4132 |
| 2 |
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
| 3 |
AuthorDate: Sat Jul 30 10:33:38 2011 +0000 |
| 4 |
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
| 5 |
CommitDate: Sat Jul 30 10:33:38 2011 +0000 |
| 6 |
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=09c93bc4 |
| 7 |
|
| 8 |
dev-perl/Bio-DB-Das-Chado: new package required by sci-biology/gbrowse |
| 9 |
|
| 10 |
(Portage version: 2.1.10.7/git/Linux i686, unsigned Manifest commit) |
| 11 |
|
| 12 |
--- |
| 13 |
dev-perl/BTLib/BTLib-0.19.ebuild | 21 ++++++++++ |
| 14 |
dev-perl/BTLib/ChangeLog | 10 +++++ |
| 15 |
dev-perl/BTLib/metadata.xml | 5 ++ |
| 16 |
dev-perl/Bio-BigFile/Bio-BigFile-1.06.ebuild | 27 +++++++++++++ |
| 17 |
dev-perl/Bio-BigFile/files/Build.PL.patch | 40 ++++++++++++++++++++ |
| 18 |
dev-perl/Bio-BigFile/metadata.xml | 9 ++++ |
| 19 |
.../Bio-DB-Das-Chado/Bio-DB-Das-Chado-0.32.ebuild | 21 ++++++++++ |
| 20 |
dev-perl/Bio-DB-Das-Chado/ChangeLog | 10 +++++ |
| 21 |
dev-perl/Bio-DB-Das-Chado/metadata.xml | 9 ++++ |
| 22 |
dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild | 30 +++++++++++++++ |
| 23 |
dev-perl/Bio-SamTools/ChangeLog | 10 +++++ |
| 24 |
dev-perl/Bio-SamTools/metadata.xml | 5 ++ |
| 25 |
dev-perl/DBIx-DBStag/ChangeLog | 10 +++++ |
| 26 |
dev-perl/DBIx-DBStag/DBIx-DBStag-0.12.ebuild | 25 ++++++++++++ |
| 27 |
dev-perl/DBIx-DBStag/metadata.xml | 9 ++++ |
| 28 |
dev-perl/Text-ParseWords/ChangeLog | 10 +++++ |
| 29 |
.../Text-ParseWords/Text-ParseWords-3.27.ebuild | 21 ++++++++++ |
| 30 |
dev-perl/Text-ParseWords/metadata.xml | 9 ++++ |
| 31 |
dev-perl/Time-Progress/ChangeLog | 10 +++++ |
| 32 |
dev-perl/Time-Progress/Time-Progress-1.7.ebuild | 16 ++++++++ |
| 33 |
dev-perl/Time-Progress/metadata.xml | 9 ++++ |
| 34 |
dev-perl/go-perl/ChangeLog | 10 +++++ |
| 35 |
dev-perl/go-perl/go-perl-0.13.ebuild | 21 ++++++++++ |
| 36 |
dev-perl/go-perl/metadata.xml | 9 ++++ |
| 37 |
24 files changed, 356 insertions(+), 0 deletions(-) |
| 38 |
|
| 39 |
diff --git a/dev-perl/BTLib/BTLib-0.19.ebuild b/dev-perl/BTLib/BTLib-0.19.ebuild |
| 40 |
new file mode 100644 |
| 41 |
index 0000000..54ff640 |
| 42 |
--- /dev/null |
| 43 |
+++ b/dev-perl/BTLib/BTLib-0.19.ebuild |
| 44 |
@@ -0,0 +1,21 @@ |
| 45 |
+# Copyright 1999-2011 Gentoo Foundation |
| 46 |
+# Distributed under the terms of the GNU General Public License v2 |
| 47 |
+# $Header: $ |
| 48 |
+ |
| 49 |
+EAPI=3 |
| 50 |
+ |
| 51 |
+MODULE_AUTHOR="" |
| 52 |
+inherit perl-module |
| 53 |
+SRC_URI="http://downloads.sourceforge.net/estscan/BTLib-0.19.tar.gz" |
| 54 |
+ |
| 55 |
+DESCRIPTION=" A part of the estscan package" |
| 56 |
+ |
| 57 |
+#LICENSE="|| ( Artistic GPL-1 GPL-2 GPL-3 )" |
| 58 |
+SLOT="0" |
| 59 |
+KEYWORDS="~amd64 ~x86" |
| 60 |
+IUSE="" |
| 61 |
+ |
| 62 |
+RDEPEND="" |
| 63 |
+DEPEND="${RDEPEND}" |
| 64 |
+ |
| 65 |
+SRC_TEST="do" |
| 66 |
|
| 67 |
diff --git a/dev-perl/BTLib/ChangeLog b/dev-perl/BTLib/ChangeLog |
| 68 |
new file mode 100644 |
| 69 |
index 0000000..3d57b6a |
| 70 |
--- /dev/null |
| 71 |
+++ b/dev-perl/BTLib/ChangeLog |
| 72 |
@@ -0,0 +1,10 @@ |
| 73 |
+# ChangeLog for dev-perl/BTLib |
| 74 |
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
| 75 |
+# $Header: $ |
| 76 |
+ |
| 77 |
+*BTLib-0.19 (30 Jul 2011) |
| 78 |
+ |
| 79 |
+ 30 Jul 2011; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> +BTLib-0.19.ebuild, |
| 80 |
+ +metadata.xml: |
| 81 |
+ dev-perl/BTLib: new package required by sci-biology/estscan |
| 82 |
+ |
| 83 |
|
| 84 |
diff --git a/dev-perl/BTLib/metadata.xml b/dev-perl/BTLib/metadata.xml |
| 85 |
new file mode 100644 |
| 86 |
index 0000000..d464821 |
| 87 |
--- /dev/null |
| 88 |
+++ b/dev-perl/BTLib/metadata.xml |
| 89 |
@@ -0,0 +1,5 @@ |
| 90 |
+<?xml version="1.0" encoding="UTF-8"?> |
| 91 |
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 92 |
+<pkgmetadata> |
| 93 |
+ <herd>sci-biology</herd> |
| 94 |
+</pkgmetadata> |
| 95 |
|
| 96 |
diff --git a/dev-perl/Bio-BigFile/Bio-BigFile-1.06.ebuild b/dev-perl/Bio-BigFile/Bio-BigFile-1.06.ebuild |
| 97 |
new file mode 100644 |
| 98 |
index 0000000..74d0554 |
| 99 |
--- /dev/null |
| 100 |
+++ b/dev-perl/Bio-BigFile/Bio-BigFile-1.06.ebuild |
| 101 |
@@ -0,0 +1,27 @@ |
| 102 |
+# Copyright 1999-2011 Gentoo Foundation |
| 103 |
+# Distributed under the terms of the GNU General Public License v2 |
| 104 |
+# $Header: $ |
| 105 |
+ |
| 106 |
+EAPI=3 |
| 107 |
+ |
| 108 |
+MODULE_AUTHOR="LDS" |
| 109 |
+inherit perl-module |
| 110 |
+ |
| 111 |
+DESCRIPTION="BigWig and BigBed file perl-based interface for Gbrowse-2" |
| 112 |
+ |
| 113 |
+#LICENSE="|| ( Artistic GPL-1 GPL-2 GPL-3 )" |
| 114 |
+SLOT="0" |
| 115 |
+KEYWORDS="~amd64 ~x86" |
| 116 |
+IUSE="" |
| 117 |
+ |
| 118 |
+RDEPEND="sci-biology/ucsc-genome-browser" |
| 119 |
+DEPEND="${RDEPEND} |
| 120 |
+ virtual/perl-Module-Build" |
| 121 |
+ |
| 122 |
+SRC_TEST="do" |
| 123 |
+ |
| 124 |
+src_prepare(){ |
| 125 |
+ epatch "${FILESDIR}"/Build.PL.patch || die "Failed to patch Build.PL" |
| 126 |
+} |
| 127 |
+ |
| 128 |
+CFLAGS="${CFLAGS} -D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64" |
| 129 |
|
| 130 |
diff --git a/dev-perl/Bio-BigFile/files/Build.PL.patch b/dev-perl/Bio-BigFile/files/Build.PL.patch |
| 131 |
new file mode 100644 |
| 132 |
index 0000000..b6dc709 |
| 133 |
--- /dev/null |
| 134 |
+++ b/dev-perl/Bio-BigFile/files/Build.PL.patch |
| 135 |
@@ -0,0 +1,40 @@ |
| 136 |
+--- Bio-BigFile-1.06/Build.PL.ori 2011-07-14 01:36:32.000000000 +0200 |
| 137 |
++++ Bio-BigFile-1.06/Build.PL 2011-07-14 02:01:27.000000000 +0200 |
| 138 |
+@@ -47,12 +47,10 @@ |
| 139 |
+ sub find_jk { |
| 140 |
+ my ($jk_include,$jk_lib); |
| 141 |
+ |
| 142 |
+- if (my $jksrc = $ENV{KENT_SRC}) { |
| 143 |
+- $jk_include = "$jksrc/inc" |
| 144 |
+- if -e "$jksrc/inc/$HeaderFile"; |
| 145 |
+- $jk_lib = "$jksrc/lib/$ENV{MACHTYPE}" |
| 146 |
+- if -e "$jksrc/lib/$ENV{MACHTYPE}/$LibFile"; |
| 147 |
+- } |
| 148 |
++ $jk_include = "/usr/include/ucsc-genome-browser" |
| 149 |
++ if -e "/usr/include/ucsc-genome-browser/$HeaderFile"; |
| 150 |
++ $jk_lib = "/usr/lib" |
| 151 |
++ if -e "/usr/lib/$LibFile"; |
| 152 |
+ |
| 153 |
+ unless ($jk_include && $jk_lib) { |
| 154 |
+ print STDERR <<END; |
| 155 |
+@@ -67,15 +65,15 @@ |
| 156 |
+ |
| 157 |
+ END |
| 158 |
+ my $prompt = "Please enter the location of Kent source tree: "; |
| 159 |
+- my $found; |
| 160 |
++ my $found = 1; |
| 161 |
+ while (!$found) { |
| 162 |
+ my $path = prompt($prompt); |
| 163 |
+ print STDERR "\n"; |
| 164 |
+ last unless $path; |
| 165 |
+- $jk_include = "$path/inc" |
| 166 |
+- if -e "$path/inc/$HeaderFile"; |
| 167 |
+- $jk_lib = "$path/lib/$ENV{MACHTYPE}" |
| 168 |
+- if -e "$path/lib/$ENV{MACHTYPE}/$LibFile"; |
| 169 |
++ $jk_include = "/usr/include/ucsc-genome-browser" |
| 170 |
++ if -e "/usr/include/ucsc-genome-browser/$HeaderFile"; |
| 171 |
++ $jk_lib = "/usr/lib" |
| 172 |
++ if -e "/usr/lib/$LibFile"; |
| 173 |
+ $found = $jk_include && $jk_lib; |
| 174 |
+ unless ($found) { |
| 175 |
+ print STDERR "Can't find the $HeaderFile and $LibFile files at this location.\n"; |
| 176 |
|
| 177 |
diff --git a/dev-perl/Bio-BigFile/metadata.xml b/dev-perl/Bio-BigFile/metadata.xml |
| 178 |
new file mode 100644 |
| 179 |
index 0000000..07b5255 |
| 180 |
--- /dev/null |
| 181 |
+++ b/dev-perl/Bio-BigFile/metadata.xml |
| 182 |
@@ -0,0 +1,9 @@ |
| 183 |
+<?xml version="1.0" encoding="UTF-8"?> |
| 184 |
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 185 |
+<pkgmetadata> |
| 186 |
+ <herd>sci-biology</herd> |
| 187 |
+ <maintainer> |
| 188 |
+ <email>mmokrejs@×××××××××××××××.cz</email> |
| 189 |
+ <name>Martin Mokrejs</name> |
| 190 |
+ </maintainer> |
| 191 |
+</pkgmetadata> |
| 192 |
|
| 193 |
diff --git a/dev-perl/Bio-DB-Das-Chado/Bio-DB-Das-Chado-0.32.ebuild b/dev-perl/Bio-DB-Das-Chado/Bio-DB-Das-Chado-0.32.ebuild |
| 194 |
new file mode 100644 |
| 195 |
index 0000000..0735845 |
| 196 |
--- /dev/null |
| 197 |
+++ b/dev-perl/Bio-DB-Das-Chado/Bio-DB-Das-Chado-0.32.ebuild |
| 198 |
@@ -0,0 +1,21 @@ |
| 199 |
+# Copyright 1999-2011 Gentoo Foundation |
| 200 |
+# Distributed under the terms of the GNU General Public License v2 |
| 201 |
+# $Header: $ |
| 202 |
+ |
| 203 |
+EAPI=3 |
| 204 |
+ |
| 205 |
+MODULE_AUTHOR="SCAIN" |
| 206 |
+inherit perl-module |
| 207 |
+ |
| 208 |
+DESCRIPTION="A Chado database interface for Gbrowse-2" |
| 209 |
+ |
| 210 |
+#LICENSE="|| ( Artistic GPL-1 GPL-2 GPL-3 )" |
| 211 |
+SLOT="0" |
| 212 |
+KEYWORDS="~amd64 ~x86" |
| 213 |
+IUSE="" |
| 214 |
+ |
| 215 |
+RDEPEND="dev-perl/DBD-Pg" |
| 216 |
+DEPEND="${RDEPEND} |
| 217 |
+ virtual/perl-Module-Build" |
| 218 |
+ |
| 219 |
+SRC_TEST="do" |
| 220 |
|
| 221 |
diff --git a/dev-perl/Bio-DB-Das-Chado/ChangeLog b/dev-perl/Bio-DB-Das-Chado/ChangeLog |
| 222 |
new file mode 100644 |
| 223 |
index 0000000..993e189 |
| 224 |
--- /dev/null |
| 225 |
+++ b/dev-perl/Bio-DB-Das-Chado/ChangeLog |
| 226 |
@@ -0,0 +1,10 @@ |
| 227 |
+# ChangeLog for dev-perl/Bio-DB-Das-Chado |
| 228 |
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
| 229 |
+# $Header: $ |
| 230 |
+ |
| 231 |
+*Bio-DB-Das-Chado-0.32 (30 Jul 2011) |
| 232 |
+ |
| 233 |
+ 30 Jul 2011; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
| 234 |
+ +Bio-DB-Das-Chado-0.32.ebuild, +metadata.xml: |
| 235 |
+ dev-perl/Bio-DB-Das-Chado: new package required by sci-biology/gbrowse |
| 236 |
+ |
| 237 |
|
| 238 |
diff --git a/dev-perl/Bio-DB-Das-Chado/metadata.xml b/dev-perl/Bio-DB-Das-Chado/metadata.xml |
| 239 |
new file mode 100644 |
| 240 |
index 0000000..07b5255 |
| 241 |
--- /dev/null |
| 242 |
+++ b/dev-perl/Bio-DB-Das-Chado/metadata.xml |
| 243 |
@@ -0,0 +1,9 @@ |
| 244 |
+<?xml version="1.0" encoding="UTF-8"?> |
| 245 |
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 246 |
+<pkgmetadata> |
| 247 |
+ <herd>sci-biology</herd> |
| 248 |
+ <maintainer> |
| 249 |
+ <email>mmokrejs@×××××××××××××××.cz</email> |
| 250 |
+ <name>Martin Mokrejs</name> |
| 251 |
+ </maintainer> |
| 252 |
+</pkgmetadata> |
| 253 |
|
| 254 |
diff --git a/dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild b/dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild |
| 255 |
new file mode 100644 |
| 256 |
index 0000000..1b985ff |
| 257 |
--- /dev/null |
| 258 |
+++ b/dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild |
| 259 |
@@ -0,0 +1,30 @@ |
| 260 |
+# Copyright 1999-2011 Gentoo Foundation |
| 261 |
+# Distributed under the terms of the GNU General Public License v2 |
| 262 |
+# This ebuild generated by g-cpan 0.16.4 |
| 263 |
+ |
| 264 |
+EAPI="2" |
| 265 |
+ |
| 266 |
+MODULE_AUTHOR="LDS" |
| 267 |
+ |
| 268 |
+inherit perl-module |
| 269 |
+ |
| 270 |
+DESCRIPTION="Bio::DB::Sam -- Read SAM/BAM database files" |
| 271 |
+ |
| 272 |
+LICENSE="|| ( Artistic GPL-1 GPL-2 GPL-3 )" |
| 273 |
+SLOT="0" |
| 274 |
+KEYWORDS="~amd64 ~x86" |
| 275 |
+IUSE="" |
| 276 |
+ |
| 277 |
+DEPEND=">=sci-biology/bioperl-1.6.901 |
| 278 |
+ virtual/perl-Module-Build |
| 279 |
+ dev-lang/perl |
| 280 |
+ >=sci-biology/samtools-0.1.16" |
| 281 |
+ |
| 282 |
+RDEPEND="${DEPEND}" |
| 283 |
+ |
| 284 |
+src_prepare(){ |
| 285 |
+ sed -i s'#HeaderFile = "bam.h#HeaderFile = "bam/bam.h#' "${WORKDIR}"/"${P}"/Build.PL || die "Failed to fix bam.h to bam/bam.h in Build.PL" |
| 286 |
+ sed -i s'#include "bam.h#include "bam/bam.h#' "${WORKDIR}"/"${P}"/lib/Bio/DB/Sam.xs || die "Failed to fix bam.h to bam/bam.h in lib/Bio/DB/Sam.xs" |
| 287 |
+ sed -i s'#include "khash.h#include "bam/khash.h#' "${WORKDIR}"/"${P}"/lib/Bio/DB/Sam.xs || die "Failed to fix khash.h to bam/khash.h in lib/Bio/DB/Sam.xs" |
| 288 |
+ sed -i s'#include "faidx.h#include "bam/faidx.h#' "${WORKDIR}"/"${P}"/lib/Bio/DB/Sam.xs || die "Failed to fix faidx.h to bam/faidx.h in lib/Bio/DB/Sam.xs" |
| 289 |
+} |
| 290 |
|
| 291 |
diff --git a/dev-perl/Bio-SamTools/ChangeLog b/dev-perl/Bio-SamTools/ChangeLog |
| 292 |
new file mode 100644 |
| 293 |
index 0000000..f54409a |
| 294 |
--- /dev/null |
| 295 |
+++ b/dev-perl/Bio-SamTools/ChangeLog |
| 296 |
@@ -0,0 +1,10 @@ |
| 297 |
+# ChangeLog for dev-perl/Bio-SamTools |
| 298 |
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
| 299 |
+# $Header: $ |
| 300 |
+ |
| 301 |
+*Bio-SamTools-1.29 (30 Jul 2011) |
| 302 |
+ |
| 303 |
+ 30 Jul 2011; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
| 304 |
+ +Bio-SamTools-1.29.ebuild, +metadata.xml: |
| 305 |
+ dev-perl/Bio-SamTools: new package required by sci-biology/gbrowse |
| 306 |
+ |
| 307 |
|
| 308 |
diff --git a/dev-perl/Bio-SamTools/metadata.xml b/dev-perl/Bio-SamTools/metadata.xml |
| 309 |
new file mode 100644 |
| 310 |
index 0000000..d464821 |
| 311 |
--- /dev/null |
| 312 |
+++ b/dev-perl/Bio-SamTools/metadata.xml |
| 313 |
@@ -0,0 +1,5 @@ |
| 314 |
+<?xml version="1.0" encoding="UTF-8"?> |
| 315 |
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 316 |
+<pkgmetadata> |
| 317 |
+ <herd>sci-biology</herd> |
| 318 |
+</pkgmetadata> |
| 319 |
|
| 320 |
diff --git a/dev-perl/DBIx-DBStag/ChangeLog b/dev-perl/DBIx-DBStag/ChangeLog |
| 321 |
new file mode 100644 |
| 322 |
index 0000000..0d2382a |
| 323 |
--- /dev/null |
| 324 |
+++ b/dev-perl/DBIx-DBStag/ChangeLog |
| 325 |
@@ -0,0 +1,10 @@ |
| 326 |
+# ChangeLog for dev-perl/DBIx-DBStag |
| 327 |
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
| 328 |
+# $Header: $ |
| 329 |
+ |
| 330 |
+*DBIx-DBStag-0.12 (30 Jul 2011) |
| 331 |
+ |
| 332 |
+ 30 Jul 2011; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
| 333 |
+ +DBIx-DBStag-0.12.ebuild, +metadata.xml: |
| 334 |
+ dev-perl/DBIx-DBStag: new package required by sci-biology/gbrowse |
| 335 |
+ |
| 336 |
|
| 337 |
diff --git a/dev-perl/DBIx-DBStag/DBIx-DBStag-0.12.ebuild b/dev-perl/DBIx-DBStag/DBIx-DBStag-0.12.ebuild |
| 338 |
new file mode 100644 |
| 339 |
index 0000000..aaeebfb |
| 340 |
--- /dev/null |
| 341 |
+++ b/dev-perl/DBIx-DBStag/DBIx-DBStag-0.12.ebuild |
| 342 |
@@ -0,0 +1,25 @@ |
| 343 |
+# Copyright 1999-2011 Gentoo Foundation |
| 344 |
+# Distributed under the terms of the GNU General Public License v2 |
| 345 |
+# This ebuild generated by g-cpan 0.16.4 |
| 346 |
+ |
| 347 |
+EAPI="2" |
| 348 |
+ |
| 349 |
+MODULE_AUTHOR="SCAIN" |
| 350 |
+ |
| 351 |
+inherit perl-module |
| 352 |
+ |
| 353 |
+DESCRIPTION="Relational Database to Hierarchical (Stag/XML) Mapping" |
| 354 |
+ |
| 355 |
+LICENSE="|| ( Artistic GPL-1 GPL-2 GPL-3 )" |
| 356 |
+SLOT="0" |
| 357 |
+KEYWORDS="~amd64 ~x86" |
| 358 |
+IUSE="" |
| 359 |
+ |
| 360 |
+DEPEND=">=dev-perl/DBIx-DBSchema-0.39 |
| 361 |
+ dev-perl/libxml-perl |
| 362 |
+ >=dev-perl/Data-Stag-0.11 |
| 363 |
+ dev-perl/DBI |
| 364 |
+ dev-perl/Parse-RecDescent |
| 365 |
+ dev-lang/perl" |
| 366 |
+ |
| 367 |
+RDEPEND="${DEPEND}" |
| 368 |
|
| 369 |
diff --git a/dev-perl/DBIx-DBStag/metadata.xml b/dev-perl/DBIx-DBStag/metadata.xml |
| 370 |
new file mode 100644 |
| 371 |
index 0000000..07b5255 |
| 372 |
--- /dev/null |
| 373 |
+++ b/dev-perl/DBIx-DBStag/metadata.xml |
| 374 |
@@ -0,0 +1,9 @@ |
| 375 |
+<?xml version="1.0" encoding="UTF-8"?> |
| 376 |
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 377 |
+<pkgmetadata> |
| 378 |
+ <herd>sci-biology</herd> |
| 379 |
+ <maintainer> |
| 380 |
+ <email>mmokrejs@×××××××××××××××.cz</email> |
| 381 |
+ <name>Martin Mokrejs</name> |
| 382 |
+ </maintainer> |
| 383 |
+</pkgmetadata> |
| 384 |
|
| 385 |
diff --git a/dev-perl/Text-ParseWords/ChangeLog b/dev-perl/Text-ParseWords/ChangeLog |
| 386 |
new file mode 100644 |
| 387 |
index 0000000..21674a4 |
| 388 |
--- /dev/null |
| 389 |
+++ b/dev-perl/Text-ParseWords/ChangeLog |
| 390 |
@@ -0,0 +1,10 @@ |
| 391 |
+# ChangeLog for dev-perl/Text-ParseWords |
| 392 |
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
| 393 |
+# $Header: $ |
| 394 |
+ |
| 395 |
+*Text-ParseWords-3.27 (30 Jul 2011) |
| 396 |
+ |
| 397 |
+ 30 Jul 2011; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
| 398 |
+ +Text-ParseWords-3.27.ebuild, +metadata.xml: |
| 399 |
+ dev-perl/Text-ParseWords: new package required by sci-biology/gbrowse |
| 400 |
+ |
| 401 |
|
| 402 |
diff --git a/dev-perl/Text-ParseWords/Text-ParseWords-3.27.ebuild b/dev-perl/Text-ParseWords/Text-ParseWords-3.27.ebuild |
| 403 |
new file mode 100644 |
| 404 |
index 0000000..57f8bc5 |
| 405 |
--- /dev/null |
| 406 |
+++ b/dev-perl/Text-ParseWords/Text-ParseWords-3.27.ebuild |
| 407 |
@@ -0,0 +1,21 @@ |
| 408 |
+# Copyright 1999-2011 Gentoo Foundation |
| 409 |
+# Distributed under the terms of the GNU General Public License v2 |
| 410 |
+# This ebuild generated by g-cpan 0.16.4 |
| 411 |
+ |
| 412 |
+EAPI="2" |
| 413 |
+ |
| 414 |
+MODULE_AUTHOR="CHORNY" |
| 415 |
+MODULE_A_EXT="zip" |
| 416 |
+ |
| 417 |
+inherit perl-module |
| 418 |
+ |
| 419 |
+DESCRIPTION="Parse strings containing shell-style quoting" |
| 420 |
+ |
| 421 |
+LICENSE="|| ( Artistic GPL-1 GPL-2 GPL-3 )" |
| 422 |
+SLOT="0" |
| 423 |
+KEYWORDS="~amd64 ~x86" |
| 424 |
+IUSE="" |
| 425 |
+ |
| 426 |
+DEPEND="dev-lang/perl" |
| 427 |
+ |
| 428 |
+RDEPEND="${DEPEND}" |
| 429 |
|
| 430 |
diff --git a/dev-perl/Text-ParseWords/metadata.xml b/dev-perl/Text-ParseWords/metadata.xml |
| 431 |
new file mode 100644 |
| 432 |
index 0000000..07b5255 |
| 433 |
--- /dev/null |
| 434 |
+++ b/dev-perl/Text-ParseWords/metadata.xml |
| 435 |
@@ -0,0 +1,9 @@ |
| 436 |
+<?xml version="1.0" encoding="UTF-8"?> |
| 437 |
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 438 |
+<pkgmetadata> |
| 439 |
+ <herd>sci-biology</herd> |
| 440 |
+ <maintainer> |
| 441 |
+ <email>mmokrejs@×××××××××××××××.cz</email> |
| 442 |
+ <name>Martin Mokrejs</name> |
| 443 |
+ </maintainer> |
| 444 |
+</pkgmetadata> |
| 445 |
|
| 446 |
diff --git a/dev-perl/Time-Progress/ChangeLog b/dev-perl/Time-Progress/ChangeLog |
| 447 |
new file mode 100644 |
| 448 |
index 0000000..88eb8ec |
| 449 |
--- /dev/null |
| 450 |
+++ b/dev-perl/Time-Progress/ChangeLog |
| 451 |
@@ -0,0 +1,10 @@ |
| 452 |
+# ChangeLog for dev-perl/Time-Progress |
| 453 |
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
| 454 |
+# $Header: $ |
| 455 |
+ |
| 456 |
+*Time-Progress-1.7 (30 Jul 2011) |
| 457 |
+ |
| 458 |
+ 30 Jul 2011; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
| 459 |
+ +Time-Progress-1.7.ebuild, +metadata.xml: |
| 460 |
+ dev-perl/Time-Progress: new package required by sci-biology/gbrowse |
| 461 |
+ |
| 462 |
|
| 463 |
diff --git a/dev-perl/Time-Progress/Time-Progress-1.7.ebuild b/dev-perl/Time-Progress/Time-Progress-1.7.ebuild |
| 464 |
new file mode 100644 |
| 465 |
index 0000000..7bb62ec |
| 466 |
--- /dev/null |
| 467 |
+++ b/dev-perl/Time-Progress/Time-Progress-1.7.ebuild |
| 468 |
@@ -0,0 +1,16 @@ |
| 469 |
+# Copyright 1999-2011 Gentoo Foundation |
| 470 |
+# Distributed under the terms of the GNU General Public License v2 |
| 471 |
+# This ebuild generated by g-cpan 0.16.4 |
| 472 |
+ |
| 473 |
+EAPI="2" |
| 474 |
+ |
| 475 |
+MODULE_AUTHOR="CADE" |
| 476 |
+ |
| 477 |
+inherit perl-module |
| 478 |
+ |
| 479 |
+DESCRIPTION="Elapsed and estimated finish time reporting." |
| 480 |
+ |
| 481 |
+LICENSE="|| ( Artistic GPL-1 GPL-2 GPL-3 )" |
| 482 |
+SLOT="0" |
| 483 |
+KEYWORDS="~amd64 ~x86" |
| 484 |
+IUSE="" |
| 485 |
|
| 486 |
diff --git a/dev-perl/Time-Progress/metadata.xml b/dev-perl/Time-Progress/metadata.xml |
| 487 |
new file mode 100644 |
| 488 |
index 0000000..07b5255 |
| 489 |
--- /dev/null |
| 490 |
+++ b/dev-perl/Time-Progress/metadata.xml |
| 491 |
@@ -0,0 +1,9 @@ |
| 492 |
+<?xml version="1.0" encoding="UTF-8"?> |
| 493 |
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 494 |
+<pkgmetadata> |
| 495 |
+ <herd>sci-biology</herd> |
| 496 |
+ <maintainer> |
| 497 |
+ <email>mmokrejs@×××××××××××××××.cz</email> |
| 498 |
+ <name>Martin Mokrejs</name> |
| 499 |
+ </maintainer> |
| 500 |
+</pkgmetadata> |
| 501 |
|
| 502 |
diff --git a/dev-perl/go-perl/ChangeLog b/dev-perl/go-perl/ChangeLog |
| 503 |
new file mode 100644 |
| 504 |
index 0000000..2e162b5 |
| 505 |
--- /dev/null |
| 506 |
+++ b/dev-perl/go-perl/ChangeLog |
| 507 |
@@ -0,0 +1,10 @@ |
| 508 |
+# ChangeLog for dev-perl/go-perl |
| 509 |
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
| 510 |
+# $Header: $ |
| 511 |
+ |
| 512 |
+*go-perl-0.13 (30 Jul 2011) |
| 513 |
+ |
| 514 |
+ 30 Jul 2011; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
| 515 |
+ +go-perl-0.13.ebuild, +metadata.xml: |
| 516 |
+ dev-perl/go-perl: new package required by sci-biology/gbrowse |
| 517 |
+ |
| 518 |
|
| 519 |
diff --git a/dev-perl/go-perl/go-perl-0.13.ebuild b/dev-perl/go-perl/go-perl-0.13.ebuild |
| 520 |
new file mode 100644 |
| 521 |
index 0000000..ae9db23 |
| 522 |
--- /dev/null |
| 523 |
+++ b/dev-perl/go-perl/go-perl-0.13.ebuild |
| 524 |
@@ -0,0 +1,21 @@ |
| 525 |
+# Copyright 1999-2011 Gentoo Foundation |
| 526 |
+# Distributed under the terms of the GNU General Public License v2 |
| 527 |
+# This ebuild generated by g-cpan 0.16.4 |
| 528 |
+ |
| 529 |
+EAPI="2" |
| 530 |
+ |
| 531 |
+MODULE_AUTHOR="CMUNGALL" |
| 532 |
+ |
| 533 |
+inherit perl-module |
| 534 |
+ |
| 535 |
+DESCRIPTION="GO::Parser parses all GO files formats and types" |
| 536 |
+ |
| 537 |
+LICENSE="|| ( Artistic GPL-1 GPL-2 GPL-3 )" |
| 538 |
+SLOT="0" |
| 539 |
+KEYWORDS="~amd64 ~x86" |
| 540 |
+IUSE="" |
| 541 |
+ |
| 542 |
+DEPEND=">=dev-perl/Data-Stag-0.11 |
| 543 |
+ dev-lang/perl" |
| 544 |
+ |
| 545 |
+RDEPEND="${DEPEND}" |
| 546 |
|
| 547 |
diff --git a/dev-perl/go-perl/metadata.xml b/dev-perl/go-perl/metadata.xml |
| 548 |
new file mode 100644 |
| 549 |
index 0000000..07b5255 |
| 550 |
--- /dev/null |
| 551 |
+++ b/dev-perl/go-perl/metadata.xml |
| 552 |
@@ -0,0 +1,9 @@ |
| 553 |
+<?xml version="1.0" encoding="UTF-8"?> |
| 554 |
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 555 |
+<pkgmetadata> |
| 556 |
+ <herd>sci-biology</herd> |
| 557 |
+ <maintainer> |
| 558 |
+ <email>mmokrejs@×××××××××××××××.cz</email> |
| 559 |
+ <name>Martin Mokrejs</name> |
| 560 |
+ </maintainer> |
| 561 |
+</pkgmetadata> |
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