From: | "Andrey Kislyuk (weaver)" <weaver@g.o> |
---|---|
To: | gentoo-commits@l.g.o |
Subject: | [gentoo-commits] gentoo-x86 commit in sci-biology/hmmer: hmmer-3.0_beta1.ebuild ChangeLog hmmer-3.0_alpha2.ebuild |
Date: | Sun, 21 Jun 2009 15:29:39 |
Message-Id: | E1MIOzB-00023I-5F@stork.gentoo.org |
1 | weaver 09/06/21 15:29:37 |
2 | |
3 | Modified: ChangeLog |
4 | Added: hmmer-3.0_beta1.ebuild |
5 | Removed: hmmer-3.0_alpha2.ebuild |
6 | Log: |
7 | Version bump |
8 | (Portage version: 2.2_rc30/cvs/Linux x86_64) |
9 | |
10 | Revision Changes Path |
11 | 1.25 sci-biology/hmmer/ChangeLog |
12 | |
13 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/hmmer/ChangeLog?rev=1.25&view=markup |
14 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/hmmer/ChangeLog?rev=1.25&content-type=text/plain |
15 | diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/hmmer/ChangeLog?r1=1.24&r2=1.25 |
16 | |
17 | Index: ChangeLog |
18 | =================================================================== |
19 | RCS file: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v |
20 | retrieving revision 1.24 |
21 | retrieving revision 1.25 |
22 | diff -u -r1.24 -r1.25 |
23 | --- ChangeLog 2 May 2009 06:08:27 -0000 1.24 |
24 | +++ ChangeLog 21 Jun 2009 15:29:37 -0000 1.25 |
25 | @@ -1,6 +1,12 @@ |
26 | # ChangeLog for sci-biology/hmmer |
27 | # Copyright 2000-2009 Gentoo Foundation; Distributed under the GPL v2 |
28 | -# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.24 2009/05/02 06:08:27 weaver Exp $ |
29 | +# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.25 2009/06/21 15:29:37 weaver Exp $ |
30 | + |
31 | +*hmmer-3.0_beta1 (21 Jun 2009) |
32 | + |
33 | + 21 Jun 2009; Andrey Kislyuk <weaver@g.o> -hmmer-3.0_alpha2.ebuild, |
34 | + +hmmer-3.0_beta1.ebuild: |
35 | + Version bump |
36 | |
37 | *hmmer-3.0_alpha2 (02 May 2009) |
38 | |
39 | |
40 | |
41 | |
42 | 1.1 sci-biology/hmmer/hmmer-3.0_beta1.ebuild |
43 | |
44 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/hmmer/hmmer-3.0_beta1.ebuild?rev=1.1&view=markup |
45 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/hmmer/hmmer-3.0_beta1.ebuild?rev=1.1&content-type=text/plain |
46 | |
47 | Index: hmmer-3.0_beta1.ebuild |
48 | =================================================================== |
49 | # Copyright 1999-2009 Gentoo Foundation |
50 | # Distributed under the terms of the GNU General Public License v2 |
51 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/hmmer-3.0_beta1.ebuild,v 1.1 2009/06/21 15:29:37 weaver Exp $ |
52 | |
53 | EAPI="2" |
54 | |
55 | MY_P="hmmer-3.0b1" |
56 | |
57 | DESCRIPTION="Sequence analysis using profile hidden Markov models" |
58 | HOMEPAGE="http://hmmer.janelia.org/" |
59 | SRC_URI="ftp://selab.janelia.org/pub/software/hmmer3/${MY_P}.tar.gz" |
60 | |
61 | LICENSE="GPL-3" |
62 | SLOT="0" |
63 | IUSE="sse mpi threads" # gsl |
64 | KEYWORDS="~amd64 ~x86" |
65 | |
66 | # NB: compile failure with mpi, disabling temporarily |
67 | # gsl? ( sci-libs/gsl ) |
68 | # mpi? ( virtual/mpi ) |
69 | DEPEND="" |
70 | RDEPEND="${DEPEND}" |
71 | |
72 | S="${WORKDIR}/${MY_P}" |
73 | |
74 | src_configure() { |
75 | econf $(use_enable sse) \ |
76 | $(use_enable threads) || die |
77 | # $(use_enable mpi) \ |
78 | # $(use_with gsl) || die |
79 | } |
80 | |
81 | src_install() { |
82 | emake DESTDIR="${D}" install || die |
83 | dolib src/libhmmer.a || die |
84 | dolib easel/libeasel.a || die |
85 | insinto /usr/share/${PN} |
86 | doins -r tutorial || die |
87 | dodoc RELEASE-NOTES Userguide.pdf |
88 | } |