[gentoo-commits] proj/sci:master commit in: sci-biology/snap/

[Martin Mokrejs]

commit:     dbe9de4c173e746690c8bd2f979d0866934ad7f5
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Mar 30 18:26:24 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Mar 30 18:26:24 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=dbe9de4c

sci-biology/snap: new package

Package-Manager: portage-2.2.18

 sci-biology/snap/ChangeLog            |  9 +++++++++
 sci-biology/snap/metadata.xml         |  9 +++++++++
 sci-biology/snap/snap-20131129.ebuild | 35 +++++++++++++++++++++++++++++++++++
 3 files changed, 53 insertions(+)

diff --git a/sci-biology/snap/ChangeLog b/sci-biology/snap/ChangeLog
new file mode 100644
index 0000000..68ed8bc
--- /dev/null
+++ b/sci-biology/snap/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/snap
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*snap-20131129 (30 Mar 2015)
+
+  30 Mar 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> +metadata.xml,
+  +snap-20131129.ebuild:
+  sci-biology/snap: new package

diff --git a/sci-biology/snap/metadata.xml b/sci-biology/snap/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/snap/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@×××××××××××××××.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>

diff --git a/sci-biology/snap/snap-20131129.ebuild b/sci-biology/snap/snap-20131129.ebuild
new file mode 100644
index 0000000..6592102
--- /dev/null
+++ b/sci-biology/snap/snap-20131129.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit eutils toolchain-funcs
+
+DESCRIPTION="HMM-based prokaryotic and eukaryotic gene prediction tool"
+HOMEPAGE="http://korflab.ucdavis.edu/software.html"
+SRC_URI="http://korflab.ucdavis.edu/Software/snap-2013-11-29.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/snap
+
+src_prepare(){
+	sed -e "s#CC=\"gcc.*#CC=$(tc-getCC)#" -i Zoe/Makefile || die
+	sed -e "s#CC=\"gcc.*#CC=$(tc-getCC)#" -i Makefile || die
+}
+
+src_install(){
+	echo "ZOE=/usr/share/snap/HMM" > 99snap || die
+	doenvd 99snap
+	insinto /usr/share/snap/HMM
+	doins HMM/[a-zA-Z]*.hmm
+	dobin snap fathom forge *.pl
+	dodoc 00README
+}