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commit: e6cc55210919cbdee58bcaa282cf6ef2064aa7c2 |
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Author: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org> |
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AuthorDate: Wed Jul 29 18:47:25 2020 +0000 |
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Commit: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org> |
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CommitDate: Sat Aug 1 23:19:34 2020 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e6cc5521 |
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|
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sci-chemistry/pymol: Drop 2.3.0-r2 |
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|
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Package-Manager: Portage-3.0.1, Repoman-2.3.23 |
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Signed-off-by: Andreas Sturmlechner <asturm <AT> gentoo.org> |
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|
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sci-chemistry/pymol/pymol-2.3.0-r2.ebuild | 118 ------------------------------ |
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1 file changed, 118 deletions(-) |
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|
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diff --git a/sci-chemistry/pymol/pymol-2.3.0-r2.ebuild b/sci-chemistry/pymol/pymol-2.3.0-r2.ebuild |
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deleted file mode 100644 |
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index 5eadc9a8512..00000000000 |
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--- a/sci-chemistry/pymol/pymol-2.3.0-r2.ebuild |
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+++ /dev/null |
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@@ -1,118 +0,0 @@ |
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-# Copyright 1999-2020 Gentoo Authors |
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-# Distributed under the terms of the GNU General Public License v2 |
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- |
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-EAPI=7 |
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- |
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-PYTHON_COMPAT=( python2_7 ) |
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- |
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-inherit distutils-r1 desktop eutils flag-o-matic xdg-utils |
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- |
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-DESCRIPTION="A Python-extensible molecular graphics system" |
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-HOMEPAGE="https://www.pymol.org/" |
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-SRC_URI=" |
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- https://dev.gentoo.org/~jlec/distfiles/${PN}-1.8.4.0.png.xz |
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- https://github.com/schrodinger/pymol-open-source/archive/v${PV}.tar.gz -> ${P}.tar.gz |
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- " |
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-RESTRICT="mirror" |
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-LICENSE="PSF-2.2" |
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-SLOT="0" |
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-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" |
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-IUSE="web" |
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- |
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-DEPEND=" |
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- dev-libs/msgpack[cxx] |
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- dev-libs/mmtf-cpp |
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- || ( |
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- dev-python/numpy-python2[${PYTHON_USEDEP}] |
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- dev-python/numpy[${PYTHON_USEDEP}] |
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- ) |
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- dev-python/pmw:py2[${PYTHON_USEDEP}] |
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- dev-python/pyopengl[${PYTHON_USEDEP}] |
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- dev-python/PyQt5[opengl,${PYTHON_USEDEP}] |
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- media-libs/freetype:2 |
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- media-libs/glew:0= |
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- media-libs/glm |
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- media-libs/libpng:0= |
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- media-video/mpeg-tools |
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- sys-libs/zlib |
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- !sci-chemistry/pymol-apbs-plugin[${PYTHON_USEDEP}] |
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- web? ( !dev-python/webpy[${PYTHON_USEDEP}] )" |
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-RDEPEND="${DEPEND} |
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- sci-chemistry/chemical-mime-data |
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-" |
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- |
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-S="${WORKDIR}"/${PN}-open-source-${PV} |
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- |
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-python_prepare_all() { |
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- sed \ |
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- -e "s:\"/usr:\"${EPREFIX}/usr:g" \ |
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- -e "/ext_comp_args.*+=/s:\[.*\]$:\[\]:g" \ |
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- -e "/import/s:argparse:argparseX:g" \ |
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- -i setup.py || die |
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- |
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- sed \ |
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- -e "s:/opt/local:${EPREFIX}/usr:g" \ |
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- -e '/ext_comp_args/s:\[.*\]:[]:g' \ |
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- -i setup.py || die |
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- sed \ |
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- -e "s:\['msgpackc'\]:\['msgpack'\]:g" \ |
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- -i setup.py || die |
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- |
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- append-cxxflags -std=c++0x |
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- |
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- distutils-r1_python_prepare_all |
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-} |
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- |
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-python_install() { |
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- distutils-r1_python_install \ |
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- --pymol-path="${EPREFIX}/usr/share/pymol" |
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- |
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- sed \ |
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- -e '1d' \ |
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- -e "/APBS_BINARY_LOCATION/s:None:\"${EPREFIX}/usr/bin/apbs\":g" \ |
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- -e "/APBS_PSIZE_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/src/\":g" \ |
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- -e "/APBS_PDB2PQR_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/\":g" \ |
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- -i "${D}/$(python_get_sitedir)"/pmg_tk/startup/apbs_tools.py || die |
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-} |
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- |
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-python_install_all() { |
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- distutils-r1_python_install_all |
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- |
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- sed \ |
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- -e '1i#!/usr/bin/env python' \ |
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- "${D}/$(python_get_sitedir)"/pymol/__init__.py > "${T}"/${PN} || die |
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- |
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- python_foreach_impl python_doscript "${T}"/${PN} |
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- |
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- # These environment variables should not go in the wrapper script, or else |
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- # it will be impossible to use the PyMOL libraries from Python. |
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- cat >> "${T}"/20pymol <<- EOF |
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- PYMOL_PATH="${EPREFIX}/usr/share/pymol" |
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- PYMOL_DATA="${EPREFIX}/usr/share/pymol/data" |
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- PYMOL_SCRIPTS="${EPREFIX}/usr/share/pymol/scripts" |
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- EOF |
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- |
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- doenvd "${T}"/20pymol |
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- |
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- newicon "${WORKDIR}"/${PN}-1.8.4.0.png ${PN}.png |
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- make_desktop_entry ${PN} PyMol ${PN} \ |
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- "Graphics;Education;Science;Chemistry;" \ |
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- "MimeType=chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;" |
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- |
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- if ! use web; then |
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- rm -rf "${D}/$(python_get_sitedir)/web" || die |
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- fi |
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- |
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- rm -f "${ED}"/usr/share/${PN}/LICENSE || die |
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-} |
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- |
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-pkg_postinst() { |
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- xdg_desktop_database_update |
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- xdg_mimeinfo_database_update |
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- optfeature "Electrostatic calculations" sci-chemistry/apbs sci-chemistry/pdb2pqr |
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-} |
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- |
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-pkg_postrm() { |
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- xdg_desktop_database_update |
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- xdg_mimeinfo_database_update |
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-} |