Gentoo Archives: gentoo-commits

From: "Samuli Suominen (ssuominen)" <ssuominen@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] gentoo-x86 commit in sci-biology/qrna: qrna-2.0.3c.ebuild ChangeLog
Date: Wed, 05 Aug 2009 19:32:15
Message-Id: E1MYmDc-0005C9-6K@stork.gentoo.org
1 ssuominen 09/08/05 19:32:12
2
3 Modified: qrna-2.0.3c.ebuild ChangeLog
4 Log:
5 Fix building with GLIBC 2.10+ wrt #277098.
6 (Portage version: 2.2_rc36/cvs/Linux x86_64)
7
8 Revision Changes Path
9 1.13 sci-biology/qrna/qrna-2.0.3c.ebuild
10
11 file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/qrna-2.0.3c.ebuild?rev=1.13&view=markup
12 plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/qrna-2.0.3c.ebuild?rev=1.13&content-type=text/plain
13 diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/qrna-2.0.3c.ebuild?r1=1.12&r2=1.13
14
15 Index: qrna-2.0.3c.ebuild
16 ===================================================================
17 RCS file: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c.ebuild,v
18 retrieving revision 1.12
19 retrieving revision 1.13
20 diff -u -r1.12 -r1.13
21 --- qrna-2.0.3c.ebuild 7 Sep 2008 11:23:57 -0000 1.12
22 +++ qrna-2.0.3c.ebuild 5 Aug 2009 19:32:12 -0000 1.13
23 @@ -1,26 +1,32 @@
24 -# Copyright 1999-2008 Gentoo Foundation
25 +# Copyright 1999-2009 Gentoo Foundation
26 # Distributed under the terms of the GNU General Public License v2
27 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c.ebuild,v 1.12 2008/09/07 11:23:57 markusle Exp $
28 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c.ebuild,v 1.13 2009/08/05 19:32:12 ssuominen Exp $
29
30 -inherit toolchain-funcs
31 +inherit eutils toolchain-funcs
32
33 DESCRIPTION="Prototype ncRNA genefinder"
34 HOMEPAGE="http://selab.janelia.org/software.html"
35 SRC_URI="mirror://gentoo/${P}.tar.bz2"
36 -LICENSE="GPL-2"
37
38 +LICENSE="GPL-2"
39 SLOT="0"
40 KEYWORDS="amd64 ~ppc x86"
41 IUSE=""
42
43 -DEPEND="dev-lang/perl
44 +RDEPEND="dev-lang/perl
45 sci-biology/hmmer"
46 +DEPEND="${RDEPEND}"
47
48 -src_compile () {
49 +src_unpack() {
50 + unpack ${A}
51 + cd "${S}"
52 + epatch "${FILESDIR}"/${P}-glibc-2.10.patch
53 sed -e "s/CC = gcc/CC = $(tc-getCC)/" \
54 -e "s/CFLAGS = -O/CFLAGS = ${CFLAGS}/" \
55 -i src/Makefile squid/Makefile
56 +}
57
58 +src_compile() {
59 cd "${S}"/squid
60 emake || die
61
62
63
64
65 1.20 sci-biology/qrna/ChangeLog
66
67 file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/ChangeLog?rev=1.20&view=markup
68 plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/ChangeLog?rev=1.20&content-type=text/plain
69 diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/ChangeLog?r1=1.19&r2=1.20
70
71 Index: ChangeLog
72 ===================================================================
73 RCS file: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v
74 retrieving revision 1.19
75 retrieving revision 1.20
76 diff -u -r1.19 -r1.20
77 --- ChangeLog 7 Sep 2008 11:23:57 -0000 1.19
78 +++ ChangeLog 5 Aug 2009 19:32:12 -0000 1.20
79 @@ -1,6 +1,10 @@
80 # ChangeLog for sci-biology/qrna
81 -# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2
82 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.19 2008/09/07 11:23:57 markusle Exp $
83 +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
84 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.20 2009/08/05 19:32:12 ssuominen Exp $
85 +
86 + 05 Aug 2009; Samuli Suominen <ssuominen@g.o> qrna-2.0.3c.ebuild,
87 + +files/qrna-2.0.3c-glibc-2.10.patch:
88 + Fix building with GLIBC 2.10+ wrt #277098.
89
90 07 Sep 2008; Markus Dittrich <markusle@g.o> qrna-2.0.3c.ebuild:
91 Fixed bad HOMEPAGE and formatting in ebuild.