Gentoo Archives: gentoo-commits

From: "Robin H. Johnson (robbat2)" <robbat2@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] gentoo-x86 commit in dev-perl/Bio-SamTools: Bio-SamTools-1.330.0.ebuild ChangeLog
Date: Wed, 29 Feb 2012 08:57:42
Message-Id: 20120229085725.B1DF62004C@flycatcher.gentoo.org
1 robbat2 12/02/29 08:57:25
2
3 Modified: ChangeLog
4 Added: Bio-SamTools-1.330.0.ebuild
5 Log:
6 Version bump via perl-bump experimental tool.
7
8 (Portage version: 2.2.0_alpha89/cvs/Linux x86_64)
9
10 Revision Changes Path
11 1.6 dev-perl/Bio-SamTools/ChangeLog
12
13 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?rev=1.6&view=markup
14 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?rev=1.6&content-type=text/plain
15 diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?r1=1.5&r2=1.6
16
17 Index: ChangeLog
18 ===================================================================
19 RCS file: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v
20 retrieving revision 1.5
21 retrieving revision 1.6
22 diff -p -w -b -B -u -u -r1.5 -r1.6
23 --- ChangeLog 25 Sep 2011 11:52:27 -0000 1.5
24 +++ ChangeLog 29 Feb 2012 08:57:25 -0000 1.6
25 @@ -1,6 +1,12 @@
26 # ChangeLog for dev-perl/Bio-SamTools
27 -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
28 -# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.5 2011/09/25 11:52:27 tove Exp $
29 +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
30 +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.6 2012/02/29 08:57:25 robbat2 Exp $
31 +
32 +*Bio-SamTools-1.330.0 (29 Feb 2012)
33 +
34 + 29 Feb 2012; Robin H. Johnson <robbat2@g.o>
35 + +Bio-SamTools-1.330.0.ebuild:
36 + Version bump via perl-bump experimental tool.
37
38 *Bio-SamTools-1.310.0 (25 Sep 2011)
39
40
41
42
43 1.1 dev-perl/Bio-SamTools/Bio-SamTools-1.330.0.ebuild
44
45 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.330.0.ebuild?rev=1.1&view=markup
46 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.330.0.ebuild?rev=1.1&content-type=text/plain
47
48 Index: Bio-SamTools-1.330.0.ebuild
49 ===================================================================
50 # Copyright 1999-2012 Gentoo Foundation
51 # Distributed under the terms of the GNU General Public License v2
52 # $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.330.0.ebuild,v 1.1 2012/02/29 08:57:25 robbat2 Exp $
53
54 EAPI=4
55
56 MODULE_AUTHOR=LDS
57 MODULE_VERSION=1.33
58 inherit perl-module
59
60 DESCRIPTION="Read SAM/BAM database files"
61
62 SLOT="0"
63 KEYWORDS="~amd64 ~x86"
64 IUSE=""
65
66 RDEPEND="sci-biology/bioperl
67 >=sci-biology/samtools-0.1.16"
68 DEPEND="${RDEPEND}
69 virtual/perl-ExtUtils-CBuilder
70 virtual/perl-Module-Build
71 "
72
73 SRC_TEST=do
74
75 src_prepare() {
76 sed -i -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \
77 -e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' Build.PL || die
78 sed -i -e 's|#include "bam.h"|#include "bam/bam.h"|' \
79 -e 's|#include "khash.h"|#include "bam/khash.h"|' \
80 -e 's|#include "faidx.h"|#include "bam/faidx.h"|' lib/Bio/DB/Sam.xs || die
81 perl-module_src_prepare
82 }