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commit: 8ee85fd0668f17101b4dd8ad1b35ee0194521184 |
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Author: David Seifert <soap <AT> gentoo <DOT> org> |
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AuthorDate: Sat Sep 24 15:03:46 2016 +0000 |
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Commit: David Seifert <soap <AT> gentoo <DOT> org> |
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CommitDate: Sat Sep 24 19:02:07 2016 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8ee85fd0 |
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|
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sci-libs/libmems: Allow for compiling with GCC 6 |
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|
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Gentoo-bug: 594814 |
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* Patch taken from Debian |
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* Add sub-slot operator for dev-libs/boost |
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* Delete .la files |
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|
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Package-Manager: portage-2.3.1 |
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|
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.../libmems/files/libmems-1.6_p1-fix-c++14.patch | 18 +++++++++++++++ |
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...s-1.6_p1-r1.ebuild => libmems-1.6_p1-r2.ebuild} | 27 ++++++++++++++++------ |
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2 files changed, 38 insertions(+), 7 deletions(-) |
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|
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diff --git a/sci-libs/libmems/files/libmems-1.6_p1-fix-c++14.patch b/sci-libs/libmems/files/libmems-1.6_p1-fix-c++14.patch |
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new file mode 100644 |
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index 00000000..bde8efe |
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--- /dev/null |
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+++ b/sci-libs/libmems/files/libmems-1.6_p1-fix-c++14.patch |
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@@ -0,0 +1,18 @@ |
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+Description: Correct compilation with g++-6 |
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+Author: Gert Wollny <gw.fossdev@×××××.com> |
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+Bug-Debian: https://bugs.debian.org/811870 |
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+Forwarded: yes |
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+Bug: https://sourceforge.net/p/mauve/bugs/46/ |
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+Last-Update: 2016-06-30 |
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+ |
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+--- a/libMems/ProgressiveAligner.cpp |
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++++ b/libMems/ProgressiveAligner.cpp |
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+@@ -1599,7 +1599,7 @@ |
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+ c.SetLeftEnd(child_1, ancestral_matches[mI]->LeftEnd(1)); |
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+ c.SetOrientation(child_1, ancestral_matches[mI]->Orientation(1)); |
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+ c.SetLength(ancestral_matches[mI]->Length(1), child_1); |
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+- cga_list.push_back(make_tuple(c.Copy(), &bs[mI], ancestral_matches[mI])); |
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++ cga_list.push_back(boost::tuples::make_tuple(c.Copy(), &bs[mI], ancestral_matches[mI])); |
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+ } |
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+ |
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+ stack<node_id_t> node_stack; |
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|
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diff --git a/sci-libs/libmems/libmems-1.6_p1-r1.ebuild b/sci-libs/libmems/libmems-1.6_p1-r2.ebuild |
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similarity index 64% |
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rename from sci-libs/libmems/libmems-1.6_p1-r1.ebuild |
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rename to sci-libs/libmems/libmems-1.6_p1-r2.ebuild |
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index ac61e54..c00e615 100644 |
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--- a/sci-libs/libmems/libmems-1.6_p1-r1.ebuild |
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+++ b/sci-libs/libmems/libmems-1.6_p1-r2.ebuild |
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@@ -1,4 +1,4 @@ |
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-# Copyright 1999-2015 Gentoo Foundation |
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+# Copyright 1999-2016 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Id$ |
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|
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@@ -12,16 +12,15 @@ SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz" |
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|
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SLOT="0" |
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LICENSE="GPL-2" |
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-IUSE="doc" |
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+IUSE="doc static-libs" |
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KEYWORDS="~amd64 ~x86" |
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|
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-CDEPEND=" |
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- dev-libs/boost |
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+RDEPEND=" |
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+ dev-libs/boost:= |
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sci-libs/libgenome |
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sci-libs/libmuscle" |
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-DEPEND="${CDEPEND} |
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+DEPEND="${RDEPEND} |
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doc? ( app-doc/doxygen )" |
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-RDEPEND="${CDEPEND}" |
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|
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PATCHES=( |
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"${FILESDIR}"/${P}-build.patch |
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@@ -29,9 +28,23 @@ PATCHES=( |
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"${FILESDIR}"/${P}-gcc-4.7.patch |
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"${FILESDIR}"/${P}-broken-constness.patch |
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"${FILESDIR}"/${P}-format-security.patch |
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- ) |
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+ "${FILESDIR}"/${P}-fix-c++14.patch |
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+) |
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|
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src_prepare() { |
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default |
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eautoreconf |
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} |
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+ |
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+src_configure() { |
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+ econf \ |
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+ --enable-shared \ |
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+ $(use_enable static-libs static) |
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+} |
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+ |
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+src_install() { |
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+ default |
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+ |
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+ # package provides .pc files |
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+ find "${D}" -name '*.la' -delete || die |
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+} |