[gentoo-commits] proj/sci:master commit in: sci-biology/nesoni/

[Horea Christian]

commit:     881e4dfb05d5743b030dcc678b98b56a95bb5322
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sun Sep 27 07:47:04 2020 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sun Sep 27 07:47:04 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=881e4dfb

sci-biology/nesoni: removed package with deprecated dep

sci-biology/shrimp is dead upstream and will be pulled from ::gentoo
https://bugs.gentoo.org/735440

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/nesoni/metadata.xml        | 12 ------------
 sci-biology/nesoni/nesoni-0.128.ebuild | 32 --------------------------------
 2 files changed, 44 deletions(-)

diff --git a/sci-biology/nesoni/metadata.xml b/sci-biology/nesoni/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-biology/nesoni/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@×××××××××××××××.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@g.o</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-</pkgmetadata>

diff --git a/sci-biology/nesoni/nesoni-0.128.ebuild b/sci-biology/nesoni/nesoni-0.128.ebuild
deleted file mode 100644
index 096214e35..000000000
--- a/sci-biology/nesoni/nesoni-0.128.ebuild
+++ /dev/null
@@ -1,32 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1 eutils
-
-DESCRIPTION="Analysis package for next-generation sequencing data and prepare for IGV display"
-HOMEPAGE="http://www.vicbioinformatics.com/software.nesoni.shtml"
-SRC_URI="http://www.vicbioinformatics.com/"${P}".tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-DEPEND=""
-RDEPEND="${DEPEND}
-	sci-biology/shrimp
-	sci-biology/bowtie
-	sci-biology/mummer
-	sci-biology/biopython
-	sci-biology/picard
-	dev-lang/R"
-
-	# sci-biology/freebayes
-	# SplitsTree4 http://www.splitstree.org/
-	# BioConductor (limma, edgeR, goseq)
-	# seriation
-	# NMF