[gentoo-commits] gentoo-x86 commit in sci-biology/readseq: ChangeLog readseq-20080420.ebuild

[Donnie Berkholz (dberkholz)]

dberkholz    08/04/26 06:31:30

  Modified:             ChangeLog
  Added:                readseq-20080420.ebuild
  Log:
  Add the Java version, which is actually maintained. This could possibly use some more enhancement to add wrappers for the GUI and such, but the ebuild is already a fully functional replacement for the old version.
  (Portage version: 2.1.5_rc6)

Revision  Changes    Path
1.6                  sci-biology/readseq/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/readseq/ChangeLog?rev=1.6&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/readseq/ChangeLog?rev=1.6&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/readseq/ChangeLog?r1=1.5&r2=1.6

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/readseq/ChangeLog,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- ChangeLog	17 Aug 2006 22:20:51 -0000	1.5
+++ ChangeLog	26 Apr 2008 06:31:30 -0000	1.6
@@ -1,6 +1,14 @@
 # ChangeLog for sci-biology/readseq
-# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/readseq/ChangeLog,v 1.5 2006/08/17 22:20:51 weeve Exp $
+# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/readseq/ChangeLog,v 1.6 2008/04/26 06:31:30 dberkholz Exp $
+
+*readseq-20080420 (26 Apr 2008)
+
+  26 Apr 2008; Donnie Berkholz <dberkholz@g.o>;
+  +readseq-20080420.ebuild:
+  Add the Java version, which is actually maintained. This could possibly
+  use some more enhancement to add wrappers for the GUI and such, but the
+  ebuild is already a fully functional replacement for the old version.
 
   17 Aug 2006; Jason Wever <weeve@g.o> readseq-19930201.ebuild:
   Added ~sparc keyword wrt bug #144246.



1.1                  sci-biology/readseq/readseq-20080420.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/readseq/readseq-20080420.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/readseq/readseq-20080420.ebuild?rev=1.1&content-type=text/plain

Index: readseq-20080420.ebuild
===================================================================
# Copyright 1999-2008 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/readseq/readseq-20080420.ebuild,v 1.1 2008/04/26 06:31:30 dberkholz Exp $

EAPI=1

inherit java-pkg-2 java-ant-2

MY_P="${PN}-source-${PV}"
DESCRIPTION="Reads and writes nucleic/protein sequences in various formats."
HOMEPAGE="http://iubio.bio.indiana.edu/soft/molbio/readseq/"
# Originally unversioned at 
# http://iubio.bio.indiana.edu/soft/molbio/readseq/java/readseq-source.zip.
# Renamed to the date of the modification and mirrored
SRC_URI="http://dev.gentoo.org/~dberkholz/distfiles/${MY_P}.zip"
#SRC_URI="mirror://gentoo/${MY_P}.zip"
LICENSE="public-domain"
SLOT="0"
KEYWORDS="~amd64"
IUSE=""
COMMON="dev-java/xerces:2
	dev-java/jaxp"
RDEPEND="${COMMON}
	>=virtual/jre-1.4"
DEPEND="${COMMON}
	>=virtual/jdk-1.4
	app-arch/unzip"
S=${WORKDIR}

src_unpack() {
	unpack ${A}
	cd "${S}"
	java-pkg_jar-from xerces-2 xercesImpl.jar lib/ibm-xml4j-min.jar
	java-pkg_jar-from jaxp jaxp-ri.jar lib/orgxml.jar
}

src_install() {
	java-pkg_dojar build/readseq.jar

	java-pkg_dolauncher
}

pkg_postinst() {
	elog "Documentation is available at"
	elog "http://iubio.bio.indiana.edu/soft/molbio/readseq/java/Readseq2-help.html"
}



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