Gentoo Archives: gentoo-commits

From: "Michal Gorny (mgorny)" <mgorny@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] gentoo-x86 commit in sci-biology/raxml: raxml-7.2.6.ebuild metadata.xml ChangeLog
Date: Thu, 29 Jan 2015 21:23:17
Message-Id: 20150129212313.B108F109DA@oystercatcher.gentoo.org
1 mgorny 15/01/29 21:23:13
2
3 Modified: raxml-7.2.6.ebuild metadata.xml ChangeLog
4 Log:
5 Switch to CPU_FLAGS_X86.
6
7 (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key EFB4464E!)
8
9 Revision Changes Path
10 1.3 sci-biology/raxml/raxml-7.2.6.ebuild
11
12 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/raxml/raxml-7.2.6.ebuild?rev=1.3&view=markup
13 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/raxml/raxml-7.2.6.ebuild?rev=1.3&content-type=text/plain
14 diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/raxml/raxml-7.2.6.ebuild?r1=1.2&r2=1.3
15
16 Index: raxml-7.2.6.ebuild
17 ===================================================================
18 RCS file: /var/cvsroot/gentoo-x86/sci-biology/raxml/raxml-7.2.6.ebuild,v
19 retrieving revision 1.2
20 retrieving revision 1.3
21 diff -u -r1.2 -r1.3
22 --- raxml-7.2.6.ebuild 18 Feb 2013 12:20:50 -0000 1.2
23 +++ raxml-7.2.6.ebuild 29 Jan 2015 21:23:13 -0000 1.3
24 @@ -1,6 +1,6 @@
25 -# Copyright 1999-2013 Gentoo Foundation
26 +# Copyright 1999-2015 Gentoo Foundation
27 # Distributed under the terms of the GNU General Public License v2
28 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/raxml-7.2.6.ebuild,v 1.2 2013/02/18 12:20:50 jlec Exp $
29 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/raxml-7.2.6.ebuild,v 1.3 2015/01/29 21:23:13 mgorny Exp $
30
31 EAPI=4
32
33 @@ -13,7 +13,7 @@
34 SLOT="0"
35 LICENSE="GPL-2"
36 KEYWORDS="~amd64 ~x86"
37 -IUSE="sse3 +threads"
38 +IUSE="cpu_flags_x86_sse3 +threads"
39
40 # mpi is not supported in version 7.2.2. mpi is enabled by adding -DPARALLEL to CFLAGS
41 DEPEND="" # mpi? ( virtual/mpi )"
42 @@ -22,13 +22,13 @@
43 S="${WORKDIR}/RAxML-${PV}"
44
45 pkg_pretend() {
46 - use sse3 || die "This package needs sse3 support in your CPU"
47 + use cpu_flags_x86_sse3 || die "This package needs sse3 support in your CPU"
48 }
49
50 src_prepare() {
51 epatch "${FILESDIR}"/${P}-makefile.patch
52
53 - use sse3 && append-cflags -D__SIM_SSE3
54 + use cpu_flags_x86_sse3 && append-cflags -D__SIM_SSE3
55 use threads && \
56 append-cflags -D_USE_PTHREADS && \
57 append-ldflags -pthread
58
59
60
61 1.6 sci-biology/raxml/metadata.xml
62
63 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/raxml/metadata.xml?rev=1.6&view=markup
64 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/raxml/metadata.xml?rev=1.6&content-type=text/plain
65 diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/raxml/metadata.xml?r1=1.5&r2=1.6
66
67 Index: metadata.xml
68 ===================================================================
69 RCS file: /var/cvsroot/gentoo-x86/sci-biology/raxml/metadata.xml,v
70 retrieving revision 1.5
71 retrieving revision 1.6
72 diff -u -r1.5 -r1.6
73 --- metadata.xml 11 Mar 2013 16:51:35 -0000 1.5
74 +++ metadata.xml 29 Jan 2015 21:23:13 -0000 1.6
75 @@ -2,7 +2,4 @@
76 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
77 <pkgmetadata>
78 <herd>sci-biology</herd>
79 - <use>
80 - <flag name="sse3">Enable optimization for SSE3 capable chips</flag>
81 - </use>
82 </pkgmetadata>
83
84
85
86 1.10 sci-biology/raxml/ChangeLog
87
88 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/raxml/ChangeLog?rev=1.10&view=markup
89 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/raxml/ChangeLog?rev=1.10&content-type=text/plain
90 diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/raxml/ChangeLog?r1=1.9&r2=1.10
91
92 Index: ChangeLog
93 ===================================================================
94 RCS file: /var/cvsroot/gentoo-x86/sci-biology/raxml/ChangeLog,v
95 retrieving revision 1.9
96 retrieving revision 1.10
97 diff -u -r1.9 -r1.10
98 --- ChangeLog 11 Mar 2013 16:51:35 -0000 1.9
99 +++ ChangeLog 29 Jan 2015 21:23:13 -0000 1.10
100 @@ -1,6 +1,10 @@
101 # ChangeLog for sci-biology/raxml
102 -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
103 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/ChangeLog,v 1.9 2013/03/11 16:51:35 jlec Exp $
104 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
105 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/ChangeLog,v 1.10 2015/01/29 21:23:13 mgorny Exp $
106 +
107 + 29 Jan 2015; Michał Górny <mgorny@g.o> metadata.xml,
108 + raxml-7.2.6.ebuild:
109 + Switch to CPU_FLAGS_X86.
110
111 11 Mar 2013; Justin Lecher <jlec@g.o> metadata.xml:
112 Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
113 @@ -45,4 +49,3 @@
114 03 Sep 2009; Andrey Kislyuk <weaver@g.o> +metadata.xml,
115 +raxml-7.0.4.ebuild:
116 New package, ebuild written by me
117 -