[gentoo-commits] proj/sci:jlec/scilab commit in: sci-biology/sga/

[Justin Lecher]

commit:     2a587647f03490b80841358dfed7deb62cfe3097
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Jan 25 19:52:27 2018 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Jan 25 19:52:27 2018 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=2a587647

sci-biology/sga: add missing RDEPEND, more comments

Package-Manager: Portage-2.3.19, Repoman-2.3.6

 sci-biology/sga/sga-9999.ebuild | 10 +++++++++-
 1 file changed, 9 insertions(+), 1 deletion(-)

diff --git a/sci-biology/sga/sga-9999.ebuild b/sci-biology/sga/sga-9999.ebuild
index 38212a3e2..8ec029f94 100644
--- a/sci-biology/sga/sga-9999.ebuild
+++ b/sci-biology/sga/sga-9999.ebuild
@@ -19,6 +19,7 @@ DEPEND="dev-cpp/sparsehash
 	sys-libs/zlib
 	jemalloc? ( dev-libs/jemalloc )"
 RDEPEND="${DEPEND}
+	sci-biology/abyss
 	python? ( sci-biology/pysam
 			sci-biology/ruffus )"
 
@@ -30,7 +31,14 @@ src_configure(){
 }
 
 src_compile(){
-	cd src || die
+	# https://github.com/AlgoLab/FastStringGraph/issues/1#issuecomment-345999596
+	# https://github.com/jts/sga/issues/106
+	# https://github.com/jts/sga/pull/110
+	# https://github.com/jts/sga/issues/108
+	#
+	# other unreviewed patches:
+	# https://github.com/jts/sga/issues/96
+	cd src || die "Try -atd=g++-98, try gcc-5 or -std=c++03"
 	default
 }