From: | "Andrey Kislyuk (weaver)" <weaver@g.o> |
---|---|
To: | gentoo-commits@l.g.o |
Subject: | [gentoo-commits] gentoo-x86 commit in sci-biology/GBrowse: GBrowse-2.48.ebuild ChangeLog GBrowse-2.39.ebuild |
Date: | Mon, 27 Feb 2012 15:55:51 |
Message-Id: | 20120227155541.F2A8D2004B@flycatcher.gentoo.org |
1 | weaver 12/02/27 15:55:41 |
2 | |
3 | Modified: ChangeLog |
4 | Added: GBrowse-2.48.ebuild |
5 | Removed: GBrowse-2.39.ebuild |
6 | Log: |
7 | Version bump |
8 | |
9 | (Portage version: 2.2.0_alpha74/cvs/Linux x86_64) |
10 | |
11 | Revision Changes Path |
12 | 1.4 sci-biology/GBrowse/ChangeLog |
13 | |
14 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/GBrowse/ChangeLog?rev=1.4&view=markup |
15 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/GBrowse/ChangeLog?rev=1.4&content-type=text/plain |
16 | diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/GBrowse/ChangeLog?r1=1.3&r2=1.4 |
17 | |
18 | Index: ChangeLog |
19 | =================================================================== |
20 | RCS file: /var/cvsroot/gentoo-x86/sci-biology/GBrowse/ChangeLog,v |
21 | retrieving revision 1.3 |
22 | retrieving revision 1.4 |
23 | diff -u -r1.3 -r1.4 |
24 | --- ChangeLog 2 Jan 2012 21:19:46 -0000 1.3 |
25 | +++ ChangeLog 27 Feb 2012 15:55:41 -0000 1.4 |
26 | @@ -1,6 +1,12 @@ |
27 | # ChangeLog for sci-biology/GBrowse |
28 | # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 |
29 | -# $Header: /var/cvsroot/gentoo-x86/sci-biology/GBrowse/ChangeLog,v 1.3 2012/01/02 21:19:46 weaver Exp $ |
30 | +# $Header: /var/cvsroot/gentoo-x86/sci-biology/GBrowse/ChangeLog,v 1.4 2012/02/27 15:55:41 weaver Exp $ |
31 | + |
32 | +*GBrowse-2.48 (27 Feb 2012) |
33 | + |
34 | + 27 Feb 2012; Andrey Kislyuk <weaver@g.o> -GBrowse-2.39.ebuild, |
35 | + +GBrowse-2.48.ebuild: |
36 | + Version bump |
37 | |
38 | *GBrowse-2.44-r1 (02 Jan 2012) |
39 | |
40 | |
41 | |
42 | |
43 | 1.1 sci-biology/GBrowse/GBrowse-2.48.ebuild |
44 | |
45 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/GBrowse/GBrowse-2.48.ebuild?rev=1.1&view=markup |
46 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/GBrowse/GBrowse-2.48.ebuild?rev=1.1&content-type=text/plain |
47 | |
48 | Index: GBrowse-2.48.ebuild |
49 | =================================================================== |
50 | # Copyright 1999-2012 Gentoo Foundation |
51 | # Distributed under the terms of the GNU General Public License v2 |
52 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/GBrowse/GBrowse-2.48.ebuild,v 1.1 2012/02/27 15:55:41 weaver Exp $ |
53 | |
54 | EAPI=4 |
55 | |
56 | MODULE_AUTHOR=LDS |
57 | inherit perl-module webapp |
58 | |
59 | DESCRIPTION="Generic Model Organism Database Project - The Generic Genome Browser" |
60 | HOMEPAGE="http://gmod.org/wiki/GBrowse" |
61 | KEYWORDS="~amd64 ~x86" |
62 | IUSE="-minimal mysql postgres +sqlite" |
63 | |
64 | SLOT="0" |
65 | WEBAPP_MANUAL_SLOT="yes" |
66 | |
67 | CDEPEND="!<sci-biology/GBrowse-2.44-r1 |
68 | >=sci-biology/bioperl-1.6.9 |
69 | >=dev-perl/Bio-Graphics-2.09 |
70 | >=dev-perl/GD-2.07 |
71 | >=dev-perl/CGI-Session-4.02 |
72 | dev-perl/IO-String |
73 | dev-perl/JSON |
74 | dev-perl/libwww-perl |
75 | dev-perl/Statistics-Descriptive |
76 | !minimal? ( |
77 | dev-perl/Bio-Das |
78 | >=dev-perl/Bio-SamTools-1.20 |
79 | dev-perl/Crypt-SSLeay |
80 | dev-perl/DB_File-Lock |
81 | dev-perl/DBI |
82 | mysql? ( dev-perl/DBD-mysql ) |
83 | postgres? ( dev-perl/DBD-Pg ) |
84 | sqlite? ( dev-perl/DBD-SQLite ) |
85 | dev-perl/FCGI |
86 | dev-perl/File-NFSLock |
87 | dev-perl/GD-SVG |
88 | dev-perl/Net-OpenID-Consumer |
89 | dev-perl/Net-SMTP-SSL |
90 | )" |
91 | # >=dev-perl/Bio-DB-BigFile-1.00 - requires jklib to compile |
92 | DEPEND="virtual/perl-Module-Build |
93 | dev-perl/Capture-Tiny |
94 | ${CDEPEND}" |
95 | RDEPEND="${CDEPEND}" |
96 | |
97 | PATCHES=( "${FILESDIR}"/GBrowseInstall.pm-2.39.patch ) |
98 | |
99 | src_configure() { |
100 | webapp_src_preinst |
101 | |
102 | # myconf="--install_base=${D}/usr" or "--install_base=/opt/gbrowse" |
103 | myconf="--conf=/etc/gbrowse2" |
104 | myconf="${myconf} --htdocs=${MY_HTDOCSDIR}" |
105 | myconf="${myconf} --cgibin=${MY_CGIBINDIR}" |
106 | myconf="${myconf} --tmp=/var/tmp/gbrowse2" |
107 | myconf="${myconf} --persistent=/var/db/gbrowse2" |
108 | myconf="${myconf} --databases=/var/db/gbrowse2/databases" |
109 | myconf="${myconf} --installconf=no" |
110 | myconf="${myconf} --installetc=no" |
111 | perl-module_src_configure |
112 | } |
113 | |
114 | src_install() { |
115 | dodir /var/tmp/gbrowse2 |
116 | dodir /var/db/gbrowse2/sessions |
117 | dodir /var/db/gbrowse2/userdata |
118 | webapp_serverowned -R /var/tmp/gbrowse2 /var/db/gbrowse2 |
119 | perl-module_src_install |
120 | webapp_src_install |
121 | } |