Gentoo Archives: gentoo-commits

From: "Justin Lecher (jlec)" <jlec@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] gentoo-x86 commit in sci-biology/meme: ChangeLog meme-4.8.1-r2.ebuild meme-4.8.1-r1.ebuild meme-4.8.1.ebuild
Date: Fri, 01 Mar 2013 12:43:58
Message-Id: 20130301124355.27E7E2171D@flycatcher.gentoo.org
1 jlec 13/03/01 12:43:55
2
3 Modified: ChangeLog
4 Added: meme-4.8.1-r2.ebuild
5 Removed: meme-4.8.1-r1.ebuild meme-4.8.1.ebuild
6 Log:
7 sci-biology/meme: Rename all binaries to meme-*; should fix all collisions in future, #458208; drop old
8
9 (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, RepoMan options: --force, signed Manifest commit with key 70EB7916)
10
11 Revision Changes Path
12 1.24 sci-biology/meme/ChangeLog
13
14 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/meme/ChangeLog?rev=1.24&view=markup
15 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/meme/ChangeLog?rev=1.24&content-type=text/plain
16 diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/meme/ChangeLog?r1=1.23&r2=1.24
17
18 Index: ChangeLog
19 ===================================================================
20 RCS file: /var/cvsroot/gentoo-x86/sci-biology/meme/ChangeLog,v
21 retrieving revision 1.23
22 retrieving revision 1.24
23 diff -u -r1.23 -r1.24
24 --- ChangeLog 1 Feb 2013 14:51:24 -0000 1.23
25 +++ ChangeLog 1 Mar 2013 12:43:54 -0000 1.24
26 @@ -1,6 +1,13 @@
27 # ChangeLog for sci-biology/meme
28 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
29 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/ChangeLog,v 1.23 2013/02/01 14:51:24 jlec Exp $
30 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/ChangeLog,v 1.24 2013/03/01 12:43:54 jlec Exp $
31 +
32 +*meme-4.8.1-r2 (01 Mar 2013)
33 +
34 + 01 Mar 2013; Justin Lecher <jlec@g.o> -meme-4.8.1.ebuild,
35 + -meme-4.8.1-r1.ebuild, +meme-4.8.1-r2.ebuild:
36 + Rename all binaries to meme-*; should fix all collisions in future, #458208;
37 + drop old
38
39 *meme-4.8.1-r1 (01 Feb 2013)
40
41
42
43
44 1.1 sci-biology/meme/meme-4.8.1-r2.ebuild
45
46 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/meme/meme-4.8.1-r2.ebuild?rev=1.1&view=markup
47 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/meme/meme-4.8.1-r2.ebuild?rev=1.1&content-type=text/plain
48
49 Index: meme-4.8.1-r2.ebuild
50 ===================================================================
51 ## Copyright 1999-2011 Gentoo Foundation
52 # Distributed under the terms of the GNU General Public License v2
53 # $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/meme-4.8.1-r2.ebuild,v 1.1 2013/03/01 12:43:54 jlec Exp $
54
55 EAPI=4
56
57 PYTHON_DEPEND="2"
58
59 inherit autotools eutils python
60
61 DESCRIPTION="The MEME/MAST system - Motif discovery and search"
62 HOMEPAGE="http://meme.sdsc.edu/meme"
63 SRC_URI="http://meme.nbcr.net/downloads/${PN}_${PV}.tar.gz"
64
65 LICENSE="meme"
66 SLOT="0"
67 KEYWORDS="amd64 x86"
68 IUSE="debug examples mpi"
69
70 DEPEND="
71 app-shells/tcsh
72 dev-libs/libxml2:2
73 dev-libs/libxslt
74 mpi? ( virtual/mpi )"
75 RDEPEND="${DEPEND}"
76
77 S="${WORKDIR}/${PN}_${PV}"
78
79 #pkg_setup() {
80 # generate meme group to restrict logging to /var/log/meme
81 # enewgroup meme
82 # python_pkg_setup
83 # python_set_active_version 2
84 #}
85
86 src_prepare() {
87 use examples || sed -e '/SUBDIRS/s:examples::g' -i doc/Makefile.am
88 sed \
89 -e '/flags/s:-O3::g' \
90 -e '/opt/s:-O::g' \
91 -e '/debug/s:-ggdb::' \
92 -e '/debug/s:-g::' \
93 -e 's:CFLAGS=:CFLAGS+=:g' \
94 -i configure.ac || die
95 epatch \
96 "${FILESDIR}"/${P}-Makefile.am.patch
97 eautoreconf
98 }
99
100 src_configure() {
101 MY_PREFIX="${ROOT}opt/meme"
102 USE_DISABLE_MPI=""; if ! use mpi; then USE_DISABLE_MPI="--enable-serial"; fi
103 econf \
104 --sysconfdir="${EPREFIX}/etc/meme" \
105 --with-logs="${ROOT}var/log/meme" \
106 $(use_enable debug) \
107 $USE_DISABLE_MPI
108 }
109
110 src_test() {
111 # bug #297070
112 emake -j1 test
113 }
114
115 src_install() {
116 local i
117 default
118
119 for i in "${ED}"/usr/bin/*; do
120 "${ED}"/usr/bin/{,meme-}${i} || die
121 done
122
123 echo "PATH=/opt/${PN}/bin" > 99${PN}
124 doenvd 99${PN}
125
126 # allow logging only for members of meme group
127 # diropts -m 0770 -g meme -o root
128 diropts -m ugo+rwxt -o root
129 keepdir /var/log/meme
130 }
131
132 #pkg_postinst() {
133 # einfo 'Log files are produced in the "/var/log/meme" directory. Users'
134 # einfo 'need to be part of the meme group to use this facility.'
135 #}