[gentoo-commits] gentoo-x86 commit in sci-biology/t-coffee: ChangeLog t-coffee-8.93.ebuild

[Justin Lecher (jlec)]

jlec        10/10/03 11:11:56

  Modified:             ChangeLog
  Added:                t-coffee-8.93.ebuild
  Log:
  Version Bump, 338199
  
  (Portage version: 2.2_rc88/cvs/Linux x86_64)

Revision  Changes    Path
1.43                 sci-biology/t-coffee/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/t-coffee/ChangeLog?rev=1.43&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/t-coffee/ChangeLog?rev=1.43&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/t-coffee/ChangeLog?r1=1.42&r2=1.43

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v
retrieving revision 1.42
retrieving revision 1.43
diff -u -r1.42 -r1.43
--- ChangeLog	18 Jun 2010 07:55:33 -0000	1.42
+++ ChangeLog	3 Oct 2010 11:11:56 -0000	1.43
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/t-coffee
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.42 2010/06/18 07:55:33 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.43 2010/10/03 11:11:56 jlec Exp $
+
+*t-coffee-8.93 (03 Oct 2010)
+
+  03 Oct 2010; Justin Lecher <jlec@g.o> +t-coffee-8.93.ebuild:
+  Version Bump, 338199
 
   18 Jun 2010; Justin Lecher <jlec@g.o> t-coffee-8.69.ebuild:
   Fix installation, #324307



1.1                  sci-biology/t-coffee/t-coffee-8.93.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/t-coffee/t-coffee-8.93.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/t-coffee/t-coffee-8.93.ebuild?rev=1.1&content-type=text/plain

Index: t-coffee-8.93.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-8.93.ebuild,v 1.1 2010/10/03 11:11:56 jlec Exp $

EAPI="2"

inherit flag-o-matic toolchain-funcs

DESCRIPTION="A multiple sequence alignment package"
HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
SRC_URI="http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"

LICENSE="GPL-2"
SLOT="0"
IUSE="examples test"
KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"

RDEPEND="sci-biology/clustalw"
DEPEND="${DEPEND}
	test? ( dev-lang/perl )"

S="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"

die_compile() {
	echo
	eerror "If you experience an internal compiler error (consult the above"
	eerror "messages), try compiling t-coffee using very modest compiler flags."
	eerror "See bug #114745 on the Gentoo Bugzilla for more details."
	die "Compilation failed"
}

src_prepare() {
	epatch "${FILESDIR}"/8.69-flags.patch
	epatch "${FILESDIR}"/8.69-test.patch
}

src_compile() {
	[[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time
	[[ $(gcc-version) == "4.1" ]] && append-flags -fno-unit-at-a-time
	emake \
		CC="$(tc-getCC)" CFLAGS="${CFLAGS}" \
		-C t_coffee_source || die_compile
}

src_test() {
	cd "${TCDIR}"
	perl bin/test.pl || die
}

src_install() {
	dobin t_coffee_source/t_coffee || die "Failed to install program."

#	insinto /usr/share/${PN}/lib/html
#	doins html/* || die "Failed to install Web interface files."

	dodoc doc/*.txt || die "Failed to install text documentation."
	dohtml doc/*.htm || die "Failed to install HTML documentation."

	insinto /usr/share/doc/${PF}
	doins doc/*.doc || die "Failed to install DOC documentation."

	if use examples; then
		insinto /usr/share/${PN}
		doins -r example || die "Failed to install example files."
	fi
}