[gentoo-commits] gentoo-x86 commit in sci-biology/primer3: ChangeLog primer3-2.3.0.ebuild primer3-1.1.4.ebuild

[Andrey Kislyuk (weaver)]

weaver      12/02/28 05:41:15

  Modified:             ChangeLog
  Added:                primer3-2.3.0.ebuild
  Removed:              primer3-1.1.4.ebuild
  Log:
  Version bump
  
  (Portage version: 2.2.0_alpha74/cvs/Linux x86_64)

Revision  Changes    Path
1.30                 sci-biology/primer3/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/primer3/ChangeLog?rev=1.30&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/primer3/ChangeLog?rev=1.30&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/primer3/ChangeLog?r1=1.29&r2=1.30

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v
retrieving revision 1.29
retrieving revision 1.30
diff -u -r1.29 -r1.30
--- ChangeLog	3 Dec 2011 10:58:16 -0000	1.29
+++ ChangeLog	28 Feb 2012 05:41:15 -0000	1.30
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/primer3
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.29 2011/12/03 10:58:16 hwoarang Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.30 2012/02/28 05:41:15 weaver Exp $
+
+*primer3-2.3.0 (28 Feb 2012)
+
+  28 Feb 2012; Andrey Kislyuk <weaver@g.o> -primer3-1.1.4.ebuild,
+  +primer3-2.3.0.ebuild:
+  Version bump, remove old
 
   03 Dec 2011; Markos Chandras <hwoarang@g.o> primer3-2.2.3.ebuild:
   convert test statement to if;fi block because || die does not work on a



1.1                  sci-biology/primer3/primer3-2.3.0.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/primer3/primer3-2.3.0.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/primer3/primer3-2.3.0.ebuild?rev=1.1&content-type=text/plain

Index: primer3-2.3.0.ebuild
===================================================================
# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/primer3-2.3.0.ebuild,v 1.1 2012/02/28 05:41:15 weaver Exp $

EAPI="3"

inherit toolchain-funcs

DESCRIPTION="Primer Design for PCR reactions"
HOMEPAGE="http://primer3.sourceforge.net/"
SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"

SLOT="0"
LICENSE="GPL-2"
IUSE=""
KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris"

DEPEND="dev-lang/perl"
RDEPEND=""

src_prepare() {
	if [[ ${CHOST} == *-darwin* ]]; then
		sed -e "s:LIBOPTS ='-static':LIBOPTS =:" -i Makefile || die
	fi
	perl -i -ne 's/\$\(CPP\)/'$(tc-getCXX)'/; print unless /^(CC|CPP|CFLAGS|LDFLAGS)\s*=/' src/Makefile || die
	sed \
		-e '/oligotm/s:-o $@:$(LDFLAGS) -o $@:g' \
		-e '/long_seq_tm_test/s:-o $@:$(LDFLAGS) -o $@:g' \
		-e 's:CFLAGS:CXXFLAGS:g' \
		-i src/Makefile || die
}

src_compile() {
	emake -C src || die
}

src_test () {
	emake -C test || die
}

src_install () {
	dobin src/{long_seq_tm_test,ntdpal,oligotm,primer3_core} || die \
		"Could not install program."
	dodoc src/release_notes.txt example primer3_manual.htm || die \
		"Could not install documentation."
	insinto /opt/primer3_config
	doins -r src/primer3_config/* primer3*settings.txt || die
}