[gentoo-commits] proj/sci:master commit in: sci-biology/quast/

[Martin Mokrejs]

commit:     ba8d30305983c8aec216c07d62218879a12793c9
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 23 16:46:42 2014 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 23 16:46:42 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=ba8d3030

sci-biology/quast: a skeleton for a new python-based package, need help

Package-Manager: portage-2.2.7

---
 sci-biology/quast/ChangeLog        |  9 +++++++++
 sci-biology/quast/metadata.xml     |  9 +++++++++
 sci-biology/quast/quast-2.2.ebuild | 35 +++++++++++++++++++++++++++++++++++
 3 files changed, 53 insertions(+)

diff --git a/sci-biology/quast/ChangeLog b/sci-biology/quast/ChangeLog
new file mode 100644
index 0000000..578e834
--- /dev/null
+++ b/sci-biology/quast/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/quast
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*quast-2.2 (23 Mar 2014)
+
+  23 Mar 2014; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> +metadata.xml,
+  +quast-2.2.ebuild:
+  sci-biology/quast: a skeleton for a new python-based package, need help

diff --git a/sci-biology/quast/metadata.xml b/sci-biology/quast/metadata.xml
new file mode 100644
index 0000000..07b5255
--- /dev/null
+++ b/sci-biology/quast/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci-biology</herd>
+	<maintainer>
+		<email>mmokrejs@×××××××××××××××.cz</email>
+		<name>Martin Mokrejs</name>
+	</maintainer>
+</pkgmetadata>

diff --git a/sci-biology/quast/quast-2.2.ebuild b/sci-biology/quast/quast-2.2.ebuild
new file mode 100644
index 0000000..5f6c9b9
--- /dev/null
+++ b/sci-biology/quast/quast-2.2.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit python
+
+DESCRIPTION="Compare quality of multiple genome assemblies to each other"
+HOMEPAGE="http://bioinf.spbau.ru/QUAST"
+SRC_URI="http://sourceforge.net/projects/quast/files/"$P".tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="dev-python/matplotlib
+		sci-biology/mummer
+		sci-biology/glimmerhmm"
+#		sci-biology/GAGE
+#		sci-biology/GeneMarkS
+#		sci-biology/MetaGeneMark"
+
+# the above packages need to be created first
+
+RDEPEND="${DEPEND}
+	dev-lang/perl"
+
+src_install(){
+	dobin quast.py metaquast.py
+	dodoc manual.html CHANGES
+
+	# TODO: install lib/ subdirectory contents into some PATH and PYTHON_PATH
+}