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dberkholz 07/12/10 09:11:28 |
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|
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Added: metadata.xml Manifest mammoth-1.0.ebuild ChangeLog |
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Log: |
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Add mammoth, a nice structural alignment program. It contains the MaxSub algorithm, which is used by lots of people. |
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(Portage version: 2.1.4_rc4) |
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|
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Revision Changes Path |
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1.1 sci-biology/mammoth/metadata.xml |
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|
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mammoth/metadata.xml?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mammoth/metadata.xml?rev=1.1&content-type=text/plain |
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|
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Index: metadata.xml |
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=================================================================== |
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<?xml version="1.0" encoding="UTF-8"?> |
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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<pkgmetadata> |
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<herd>sci-biology</herd> |
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</pkgmetadata> |
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|
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|
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|
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1.1 sci-biology/mammoth/Manifest |
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|
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mammoth/Manifest?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mammoth/Manifest?rev=1.1&content-type=text/plain |
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|
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Index: Manifest |
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=================================================================== |
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AUX 1.0-consistent-system-intrinsic.patch 680 RMD160 71a2feeb7e856d37c5fa7c56e685f29ca1be0eaa SHA1 f0d388f1bea4badd8a127242057d8aeb01c8d974 SHA256 34f47d312af131414154a244218bb4e548d51a3d34b9ed4379c2ec90fba094ca |
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MD5 5a8b546609c54dd66d47e23d23e6f878 files/1.0-consistent-system-intrinsic.patch 680 |
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RMD160 71a2feeb7e856d37c5fa7c56e685f29ca1be0eaa files/1.0-consistent-system-intrinsic.patch 680 |
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SHA256 34f47d312af131414154a244218bb4e548d51a3d34b9ed4379c2ec90fba094ca files/1.0-consistent-system-intrinsic.patch 680 |
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DIST mammoth-1.0-src.tgz 319617 RMD160 32b6c9c994ba804fab352cc9cfaa3358784f1052 SHA1 79b5b3ef8873645cf102516df1de7d9b97f206c2 SHA256 7a21bc47db4a47cc5ebeeb4c46761a79eece0a802104a3d6189f388a03e59de2 |
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EBUILD mammoth-1.0.ebuild 1228 RMD160 fe206ffcbca9ffb38ee145c6b5fe7d0518921889 SHA1 f824084477699d0e6bc2680c0cf3530859160a72 SHA256 2b02e9bcc0ee91cf816063c4cbc5205c1ba762c942750112833fd5c0807ac498 |
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MD5 cc6ab6f59fd521cdb6ff3478010bf14d mammoth-1.0.ebuild 1228 |
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RMD160 fe206ffcbca9ffb38ee145c6b5fe7d0518921889 mammoth-1.0.ebuild 1228 |
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SHA256 2b02e9bcc0ee91cf816063c4cbc5205c1ba762c942750112833fd5c0807ac498 mammoth-1.0.ebuild 1228 |
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MISC ChangeLog 411 RMD160 35bc19ea0f5996bf334609c5049bb28e26610dd8 SHA1 d64d65381b39308e493f0114da9b8828f2c3299f SHA256 370d78554cf07911ced0603f26941cdc4ce510019c0da2ae06732777da36ef85 |
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MD5 4297aeff2e6eade82de0202cf239bb51 ChangeLog 411 |
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RMD160 35bc19ea0f5996bf334609c5049bb28e26610dd8 ChangeLog 411 |
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SHA256 370d78554cf07911ced0603f26941cdc4ce510019c0da2ae06732777da36ef85 ChangeLog 411 |
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MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f |
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MD5 86813ca8050bc98ba326cb74e88150a5 metadata.xml 164 |
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RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c metadata.xml 164 |
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SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f metadata.xml 164 |
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MD5 9e7286c84db15c55e105c0c055d7c31c files/digest-mammoth-1.0 238 |
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RMD160 5e825fc810aebb51a230c14a6f8c11e9c81740f4 files/digest-mammoth-1.0 238 |
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SHA256 a5a779c2a6872f4dcd03544c48302031ea4e3b896bcfc0c8fbe6b8b3370fae56 files/digest-mammoth-1.0 238 |
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1.1 sci-biology/mammoth/mammoth-1.0.ebuild |
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|
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mammoth/mammoth-1.0.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mammoth/mammoth-1.0.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: mammoth-1.0.ebuild |
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=================================================================== |
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# Copyright 1999-2007 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/mammoth/mammoth-1.0.ebuild,v 1.1 2007/12/10 09:11:28 dberkholz Exp $ |
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|
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inherit autotools eutils fortran |
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|
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MY_P="${P}-src" |
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|
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DESCRIPTION="MAtching Molecular Models Obtained from THeory" |
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HOMEPAGE="http://ub.cbm.uam.es/software.php" |
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SRC_URI="${MY_P}.tgz" |
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LICENSE="mammoth" |
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SLOT="0" |
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KEYWORDS="~x86" |
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IUSE="" |
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RESTRICT="fetch" |
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RDEPEND="" |
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DEPEND="${RDEPEND}" |
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S=${WORKDIR}/${MY_P} |
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FORTRAN="gfortran g77" |
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|
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pkg_nofetch() { |
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einfo "Download the source code for MAMMOTH from" |
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einfo "${HOMEPAGE}" |
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einfo "and place it in ${DISTDIR}" |
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} |
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|
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src_unpack() { |
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unpack ${A} |
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cd "${S}" |
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|
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# Broken with gfortran without this patch |
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epatch "${FILESDIR}"/${PV}-consistent-system-intrinsic.patch |
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|
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case ${FORTRANC} in |
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g77) append-fflags -ffixed-line-length-none ;; |
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gfortran) append-fflags -ffixed-line-length-none ;; |
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esac |
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|
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# It comes with a custom-modified configure for some reason, |
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# which forces you to pass in the Fortran compiler as a parameter. |
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# Let's do the standard stuff instead. |
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eautoreconf |
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} |
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|
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src_install() { |
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emake DESTDIR="${D}" install || die "emake install failed" |
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dodoc README AUTHORS || die |
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} |
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|
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append-fflags() { |
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[[ -z $* ]] && return 0 |
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export FFLAGS="${FFLAGS} $*" |
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return 0 |
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} |
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1.1 sci-biology/mammoth/ChangeLog |
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|
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mammoth/ChangeLog?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mammoth/ChangeLog?rev=1.1&content-type=text/plain |
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|
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Index: ChangeLog |
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=================================================================== |
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# ChangeLog for sci-biology/mammoth |
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# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/mammoth/ChangeLog,v 1.1 2007/12/10 09:11:28 dberkholz Exp $ |
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|
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*mammoth-1.0 (10 Dec 2007) |
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|
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10 Dec 2007; Donnie Berkholz <dberkholz@g.o>; |
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+files/1.0-consistent-system-intrinsic.patch, +metadata.xml, |
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+mammoth-1.0.ebuild: |
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Add mammoth, a nice structural alignment program. It contains the MaxSub |
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algorithm, which is used by lots of people. |
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|
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|
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|
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|
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-- |
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