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commit: 1c285519613a3729129b206b9a90f7534e14b73f |
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Author: Horea Christian <chr <AT> chymera <DOT> eu> |
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AuthorDate: Sun Sep 27 08:00:34 2020 +0000 |
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Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> |
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CommitDate: Sun Sep 27 08:00:34 2020 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=1c285519 |
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|
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sci-biology/ngs_backbone: removed discontinued package |
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|
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Package-Manager: Portage-3.0.8, Repoman-3.0.1 |
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Signed-off-by: Horea Christian <chr <AT> chymera.eu> |
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|
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sci-biology/ngs_backbone/metadata.xml | 12 -- |
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sci-biology/ngs_backbone/ngs_backbone-1.4.0.ebuild | 148 --------------------- |
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sci-biology/ngs_backbone/ngs_backbone-9999.ebuild | 148 --------------------- |
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3 files changed, 308 deletions(-) |
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|
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diff --git a/sci-biology/ngs_backbone/metadata.xml b/sci-biology/ngs_backbone/metadata.xml |
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deleted file mode 100644 |
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index 138cb7705..000000000 |
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--- a/sci-biology/ngs_backbone/metadata.xml |
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+++ /dev/null |
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@@ -1,12 +0,0 @@ |
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-<?xml version="1.0" encoding="UTF-8"?> |
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-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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-<pkgmetadata> |
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- <maintainer type="person"> |
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- <email>mmokrejs@×××××××××××××××.cz</email> |
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- <name>Martin Mokrejs</name> |
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- </maintainer> |
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- <maintainer type="project"> |
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- <email>sci-biology@g.o</email> |
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- <name>Gentoo Biology Project</name> |
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- </maintainer> |
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-</pkgmetadata> |
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|
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diff --git a/sci-biology/ngs_backbone/ngs_backbone-1.4.0.ebuild b/sci-biology/ngs_backbone/ngs_backbone-1.4.0.ebuild |
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deleted file mode 100644 |
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index 6ea39e0ad..000000000 |
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--- a/sci-biology/ngs_backbone/ngs_backbone-1.4.0.ebuild |
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+++ /dev/null |
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@@ -1,148 +0,0 @@ |
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-# Copyright 1999-2016 Gentoo Foundation |
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-# Distributed under the terms of the GNU General Public License v2 |
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- |
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-EAPI=6 |
| 47 |
- |
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-PYTHON_COMPAT=( python2_7 ) |
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- |
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-inherit distutils-r1 |
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- |
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-DESCRIPTION="Assembly & annotation pipeline with web interface for EST/chromosomal sequences" |
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-HOMEPAGE="http://bioinf.comav.upv.es/ngs_backbone/index.html" |
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-SRC_URI="http://bioinf.comav.upv.es/_downloads/"${P}".tar.gz" |
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- |
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-LICENSE="GPL-3" |
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-SLOT="0" |
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-KEYWORDS="~amd64" |
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-IUSE="" |
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- |
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-DEPEND="" |
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-RDEPEND="${DEPEND} |
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- sci-biology/biopython[${PYTHON_USEDEP}] |
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- sci-biology/samtools[${PYTHON_USEDEP}] |
| 65 |
- sci-biology/picard |
| 66 |
- sci-biology/mira |
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- sci-biology/bwa |
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- sci-biology/gatk |
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- sci-biology/pysam[${PYTHON_USEDEP}] |
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- sci-biology/estscan |
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- sci-biology/ncbi-tools |
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- sci-biology/lucy |
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- sci-biology/gmap |
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- sci-biology/emboss |
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- dev-python/matplotlib[${PYTHON_USEDEP}] |
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- dev-python/psubprocess[${PYTHON_USEDEP}] |
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- dev-python/configobj[${PYTHON_USEDEP}]" |
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- # ( blast2GO || b2g4pipe ) |
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- # sci-biology/sputnik |
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- # sci-biology/gsnap |
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- |
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-# blast2GO is http://www.blast2go.org/home |
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-# a non-GUI pipeline is called b2g4pipe, see https://sites.google.com/a/brown.edu/bioinformatics-in-biomed/b2g4pipe-2-5 |
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- |
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-# TODO: drop the bundled binaries but ... |
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-# 1. the QA check did not find all bundled binaries, e.g. sputnik, lucy, trimpoly |
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-# 2. until we have them all, maybe keep the installed |
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-# |
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-# * QA Notice: The following files contain writable and executable sections |
| 90 |
-# * Files with such sections will not work properly (or at all!) on some |
| 91 |
-# * architectures/operating systems. A bug should be filed at |
| 92 |
-# * http://bugs.gentoo.org/ to make sure the issue is fixed. |
| 93 |
-# * For more information, see http://hardened.gentoo.org/gnu-stack.xml |
| 94 |
-# * Please include the following list of files in your report: |
| 95 |
-# * Note: Bugs should be filed for the respective maintainers |
| 96 |
-# * of the package in question and not hardened@g.o. |
| 97 |
-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/tblastx |
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-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/makeblastdb |
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-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/blastx |
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-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/blastp |
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-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/tblastn |
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-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/blastn |
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-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/tblastx |
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-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/makeblastdb |
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-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/blastx |
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-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/blastp |
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-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/tblastn |
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-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/blastn |
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- |
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-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit |
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-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/bgzip |
| 112 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/blastn |
| 113 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/blastp |
| 114 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/blastx |
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-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/bwa |
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-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/emboss_data |
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-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/emboss_data/EBLOSUM62 |
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-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/emboss_data/EDNAFULL |
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-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/emboss_data/codes.english |
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-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/emboss_data/est2genome.acd |
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-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/emboss_data/knowntypes.standard |
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-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/emboss_data/water.acd |
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-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/est2genome |
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-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/estscan |
| 125 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/fa_coords |
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-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/gmap |
| 127 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/gmap_build |
| 128 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/gmap_compress |
| 129 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/gmap_process |
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-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/gmap_reassemble |
| 131 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/gmap_setup |
| 132 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/gmap_uncompress |
| 133 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/gmapindex |
| 134 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/gsnap |
| 135 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/gsnap_tally |
| 136 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/lucy |
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-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/makeblastdb |
| 138 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/md_coords |
| 139 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/mdust |
| 140 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/samtools |
| 141 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/sputnik |
| 142 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/tabix |
| 143 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/tblastn |
| 144 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/tblastx |
| 145 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/trimpoly |
| 146 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/water |
| 147 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit |
| 148 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/bgzip |
| 149 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/blastn |
| 150 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/blastp |
| 151 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/blastx |
| 152 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/bwa |
| 153 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/emboss_data |
| 154 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/emboss_data/EBLOSUM62 |
| 155 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/emboss_data/EDNAFULL |
| 156 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/emboss_data/codes.english |
| 157 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/emboss_data/est2genome.acd |
| 158 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/emboss_data/knowntypes.standard |
| 159 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/emboss_data/water.acd |
| 160 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/est2genome |
| 161 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/estscan |
| 162 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/fa_coords |
| 163 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/gmap |
| 164 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/gmap_build |
| 165 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/gmap_compress |
| 166 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/gmap_process |
| 167 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/gmap_reassemble |
| 168 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/gmap_setup |
| 169 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/gmap_uncompress |
| 170 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/gmapindex |
| 171 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/gsnap |
| 172 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/gsnap_tally |
| 173 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/lucy |
| 174 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/makeblastdb |
| 175 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/md_coords |
| 176 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/mdust |
| 177 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/samtools |
| 178 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/sputnik |
| 179 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/tabix |
| 180 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/tblastn |
| 181 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/tblastx |
| 182 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/trimpoly |
| 183 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/water |
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- |
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-pkg_postinst(){ |
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- einfo "It is highly recommended to install blast2GO. Either the commercial version with GUI" |
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- einfo " or a non-GUI version called b2g4pipe. Either way, refer to http://www.blast2go.org" |
| 188 |
- einfo " Brief installation process is at http://bioinf.comav.upv.es/ngs_backbone/install.html" |
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- einfo "Alternatively, a VirtualBox image with ngs_bakbone is at http://bioinf.comav.upv.es/_downloads/ngs_machine_v3.tar.gz" |
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-} |
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|
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diff --git a/sci-biology/ngs_backbone/ngs_backbone-9999.ebuild b/sci-biology/ngs_backbone/ngs_backbone-9999.ebuild |
| 193 |
deleted file mode 100644 |
| 194 |
index 03f606c31..000000000 |
| 195 |
--- a/sci-biology/ngs_backbone/ngs_backbone-9999.ebuild |
| 196 |
+++ /dev/null |
| 197 |
@@ -1,148 +0,0 @@ |
| 198 |
-# Copyright 1999-2016 Gentoo Foundation |
| 199 |
-# Distributed under the terms of the GNU General Public License v2 |
| 200 |
- |
| 201 |
-EAPI=6 |
| 202 |
- |
| 203 |
-PYTHON_COMPAT=( python2_7 ) |
| 204 |
- |
| 205 |
-inherit distutils-r1 git-r3 |
| 206 |
- |
| 207 |
-DESCRIPTION="Assembly & annotation pipeline with web interface for EST/chromosomal sequences" |
| 208 |
-HOMEPAGE="http://bioinf.comav.upv.es/ngs_backbone/index.html" |
| 209 |
-EGIT_REPO_URI="https://github.com/JoseBlanca/franklin" |
| 210 |
- |
| 211 |
-LICENSE="GPL-3" |
| 212 |
-SLOT="0" |
| 213 |
-KEYWORDS="" |
| 214 |
-IUSE="" |
| 215 |
- |
| 216 |
-DEPEND="" |
| 217 |
-RDEPEND="${DEPEND} |
| 218 |
- sci-biology/biopython[${PYTHON_USEDEP}] |
| 219 |
- sci-biology/samtools[${PYTHON_USEDEP}] |
| 220 |
- sci-biology/picard |
| 221 |
- sci-biology/mira |
| 222 |
- sci-biology/bwa |
| 223 |
- sci-biology/gatk |
| 224 |
- sci-biology/pysam[${PYTHON_USEDEP}] |
| 225 |
- sci-biology/estscan |
| 226 |
- sci-biology/ncbi-tools |
| 227 |
- sci-biology/lucy |
| 228 |
- sci-biology/gmap |
| 229 |
- sci-biology/emboss |
| 230 |
- dev-python/matplotlib[${PYTHON_USEDEP}] |
| 231 |
- dev-python/psubprocess[${PYTHON_USEDEP}] |
| 232 |
- dev-python/configobj[${PYTHON_USEDEP}]" |
| 233 |
- # ( blast2GO || b2g4pipe ) |
| 234 |
- # sci-biology/sputnik |
| 235 |
- # sci-biology/gsnap |
| 236 |
- |
| 237 |
-# blast2GO is http://www.blast2go.org/home |
| 238 |
-# a non-GUI pipeline is called b2g4pipe, see https://sites.google.com/a/brown.edu/bioinformatics-in-biomed/b2g4pipe-2-5 |
| 239 |
- |
| 240 |
-# TODO: drop the bundled binaries but ... |
| 241 |
-# 1. the QA check did not find all bundled binaries, e.g. sputnik, lucy, trimpoly |
| 242 |
-# 2. until we have them all, maybe keep the installed |
| 243 |
-# |
| 244 |
-# * QA Notice: The following files contain writable and executable sections |
| 245 |
-# * Files with such sections will not work properly (or at all!) on some |
| 246 |
-# * architectures/operating systems. A bug should be filed at |
| 247 |
-# * http://bugs.gentoo.org/ to make sure the issue is fixed. |
| 248 |
-# * For more information, see http://hardened.gentoo.org/gnu-stack.xml |
| 249 |
-# * Please include the following list of files in your report: |
| 250 |
-# * Note: Bugs should be filed for the respective maintainers |
| 251 |
-# * of the package in question and not hardened@g.o. |
| 252 |
-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/tblastx |
| 253 |
-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/makeblastdb |
| 254 |
-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/blastx |
| 255 |
-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/blastp |
| 256 |
-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/tblastn |
| 257 |
-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/blastn |
| 258 |
-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/tblastx |
| 259 |
-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/makeblastdb |
| 260 |
-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/blastx |
| 261 |
-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/blastp |
| 262 |
-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/tblastn |
| 263 |
-# * RWX --- --- usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/blastn |
| 264 |
- |
| 265 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit |
| 266 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/bgzip |
| 267 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/blastn |
| 268 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/blastp |
| 269 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/blastx |
| 270 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/bwa |
| 271 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/emboss_data |
| 272 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/emboss_data/EBLOSUM62 |
| 273 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/emboss_data/EDNAFULL |
| 274 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/emboss_data/codes.english |
| 275 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/emboss_data/est2genome.acd |
| 276 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/emboss_data/knowntypes.standard |
| 277 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/emboss_data/water.acd |
| 278 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/est2genome |
| 279 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/estscan |
| 280 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/fa_coords |
| 281 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/gmap |
| 282 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/gmap_build |
| 283 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/gmap_compress |
| 284 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/gmap_process |
| 285 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/gmap_reassemble |
| 286 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/gmap_setup |
| 287 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/gmap_uncompress |
| 288 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/gmapindex |
| 289 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/gsnap |
| 290 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/gsnap_tally |
| 291 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/lucy |
| 292 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/makeblastdb |
| 293 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/md_coords |
| 294 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/mdust |
| 295 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/samtools |
| 296 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/sputnik |
| 297 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/tabix |
| 298 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/tblastn |
| 299 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/tblastx |
| 300 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/trimpoly |
| 301 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/32bit/water |
| 302 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit |
| 303 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/bgzip |
| 304 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/blastn |
| 305 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/blastp |
| 306 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/blastx |
| 307 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/bwa |
| 308 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/emboss_data |
| 309 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/emboss_data/EBLOSUM62 |
| 310 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/emboss_data/EDNAFULL |
| 311 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/emboss_data/codes.english |
| 312 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/emboss_data/est2genome.acd |
| 313 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/emboss_data/knowntypes.standard |
| 314 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/emboss_data/water.acd |
| 315 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/est2genome |
| 316 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/estscan |
| 317 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/fa_coords |
| 318 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/gmap |
| 319 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/gmap_build |
| 320 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/gmap_compress |
| 321 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/gmap_process |
| 322 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/gmap_reassemble |
| 323 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/gmap_setup |
| 324 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/gmap_uncompress |
| 325 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/gmapindex |
| 326 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/gsnap |
| 327 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/gsnap_tally |
| 328 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/lucy |
| 329 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/makeblastdb |
| 330 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/md_coords |
| 331 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/mdust |
| 332 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/samtools |
| 333 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/sputnik |
| 334 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/tabix |
| 335 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/tblastn |
| 336 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/tblastx |
| 337 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/trimpoly |
| 338 |
-#/usr/lib64/python2.7/site-packages/ext/bin/linux/64bit/water |
| 339 |
- |
| 340 |
-pkg_postinst(){ |
| 341 |
- einfo "It is highly recommended to install blast2GO. Either the commercial version with GUI" |
| 342 |
- einfo " or a non-GUI version called b2g4pipe. Either way, refer to http://www.blast2go.org" |
| 343 |
- einfo " Brief installation process is at http://bioinf.comav.upv.es/ngs_backbone/install.html" |
| 344 |
- einfo "Alternatively, a VirtualBox image with ngs_bakbone is at http://bioinf.comav.upv.es/_downloads/ngs_machine_v3.tar.gz" |
| 345 |
-} |
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