[gentoo-commits] gentoo-x86 commit in sci-biology/t-coffee: ChangeLog t-coffee-5.31.ebuild

[Jeffrey Gardner (je_fro)]

je_fro      07/12/07 05:53:06

  Modified:             ChangeLog
  Added:                t-coffee-5.31.ebuild
  Log:
  Latest version - thanks to Martin Mokrejs on bug #201495
  (Portage version: 2.1.4_rc7)

Revision  Changes    Path
1.24                 sci-biology/t-coffee/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/ChangeLog?rev=1.24&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/ChangeLog?rev=1.24&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/ChangeLog?r1=1.23&r2=1.24

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v
retrieving revision 1.23
retrieving revision 1.24
diff -u -r1.23 -r1.24
--- ChangeLog	2 Jul 2007 15:24:09 -0000	1.23
+++ ChangeLog	7 Dec 2007 05:53:05 -0000	1.24
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/t-coffee
 # Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.23 2007/07/02 15:24:09 peper Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.24 2007/12/07 05:53:05 je_fro Exp $
+
+*t-coffee-5.31 (07 Dec 2007)
+
+  07 Dec 2007; Jeff Gardner <je_fro@g.o> +t-coffee-5.31.ebuild:
+  Latest version - thanks to Martin Mokrejs on bug #201495
 
   02 Jul 2007; Piotr Jaroszyński <peper@g.o> t-coffee-4.96.ebuild,
   t-coffee-5.05.ebuild:



1.1                  sci-biology/t-coffee/t-coffee-5.31.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/t-coffee-5.31.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/t-coffee-5.31.ebuild?rev=1.1&content-type=text/plain

Index: t-coffee-5.31.ebuild
===================================================================
# Copyright 1999-2007 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-5.31.ebuild,v 1.1 2007/12/07 05:53:05 je_fro Exp $

inherit toolchain-funcs flag-o-matic

DESCRIPTION="A multiple sequence alignment package"
LICENSE="t-coffee"
HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
SRC_URI="http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"

SLOT="0"
IUSE=""
KEYWORDS="~ppc ~x86"

RESTRICT="mirror"

DEPEND="sci-biology/clustalw"

TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
S="${TCDIR}/t_coffee_source"

src_unpack() {
	unpack ${A}
	cd "${S}"
	sed -e "s/CC	= cc/CC	= $(tc-getCC) ${CFLAGS}/" -i makefile || die \
		"Failed to patch makefile."
}

die_compile() {
	echo
	eerror "If you experience an internal compiler error (consult the above"
	eerror "messages), try compiling t-coffee using very modest compiler flags."
	eerror "See bug #114745 on the Gentoo Bugzilla for more details."
	die "Compilation failed"
}

src_compile() {
	[[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time
	[[ $(gcc-version) == "4.1" ]] && append-flags -fno-unit-at-a-time
	make all || die_compile
}

src_install() {
	dobin "${TCDIR}"/bin/t_coffee \
		|| die "Failed to install program."

	insinto /usr/share/${PN}/lib/html
	doins "${TCDIR}"/html/* \
		|| die "Failed to install Web interface files."

	cd "${TCDIR}"/doc
	dodoc aln_compare.doc.txt README4T-COFFEE seq_reformat.doc.txt \
			t_coffee_technical.txt t_coffee_tutorial.txt \
			|| die "Failed to install text documentation."

	dohtml t_coffee_technical.htm t_coffee_tutorial.htm \
		|| die "Failed to install HTML documentation."

	insinto /usr/share/doc/${PF}
	doins t_coffee_technical.doc t_coffee_tutorial.doc \
		|| die "Failed to install DOC documentation."

	insinto /usr/share/${PN}/example
	doins "${TCDIR}"/example/* \
		|| die "Failed to install example files."
}



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